-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_815

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 69, 102
Sorry, prediction GeneMark_model.108428_t fails validation.
(ACA)	 AG	69-102	GT	GAG
(GCA)	 AG	706-722	GT	AGG
(GAA)	 AG	1094-1156	GT	AAG
(GGG)	 AG	1182-1235	GT	AAG
(GGG)	 AG	1258-1290	GT	AAG
(GAG)	 AG	1316-1432	GT	AGG
(TGG)	 AG	1764-1811	GT	GAG
(GAG)	 AG	1845-1932	CA	GAC
-recovered GeneMark_model.108428_t, terminal, 1845, 1932
-recovered GeneMark_model.108428_t, internal, 69, 102
-recovered GeneMark_model.108428_t, internal, 706, 722
-recovered GeneMark_model.108428_t, internal, 1094, 1156
-recovered GeneMark_model.108428_t, internal, 1182, 1235
-recovered GeneMark_model.108428_t, internal, 1258, 1290
-recovered GeneMark_model.108428_t, internal, 1316, 1432
-recovered GeneMark_model.108428_t, internal, 1764, 1811

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2630, 2731
Sorry, prediction snap_scaffold_815-snap.1-T1 fails validation.
(ATG)	 AC	253-345	GT	AGG
(GCT)	 AG	2276-2350	GT	GTG
(ACC)	 AG	2630-2731	GT	TGG
-recovered snap_scaffold_815-snap.1-T1, initial, 253, 345
-recovered snap_scaffold_815-snap.1-T1, internal, 2276, 2350
-recovered snap_scaffold_815-snap.1-T1, internal, 2630, 2731
Valid prediction for GlimmerHMM_glimmerT_62263-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4345
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support