-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_813

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62261-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 184, 326
Sorry, prediction snap_scaffold_813-snap.1-T1 fails validation.
(TTG)	 AG	184-326	GT	AGG
(GTG)	 AG	903-948	CG	AGC
-recovered snap_scaffold_813-snap.1-T1, terminal, 903, 948
-recovered snap_scaffold_813-snap.1-T1, internal, 184, 326
Couldn't classify 96, 107
Sorry, prediction GeneMark_model.108427_t fails validation.
(ATC)	 AG	96-107	GT	GCG
(ATC)	 AG	207-326	GT	AGG
(GGT)	 AG	373-418	GG	AGG
-recovered GeneMark_model.108427_t, terminal, 373, 418
-recovered GeneMark_model.108427_t, internal, 96, 107
-recovered GeneMark_model.108427_t, internal, 207, 326

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4354
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support