-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_812

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62256-T1
Valid prediction for GlimmerHMM_glimmerT_62258-T1
Valid prediction for GlimmerHMM_glimmerT_62260-T1
Valid prediction for GlimmerHMM_glimmerT_62257-T1
Valid prediction for GlimmerHMM_glimmerT_62259-T1
Couldn't classify 822, 929
Couldn't classify 2967, 3094
Sorry, prediction snap_scaffold_812-snap.1-T1 fails validation.
(GAG)	 AG	822-929	GT	GAG
(GAG)	 AG	1024-1103	GT	TGG
(GAG)	 AG	1191-1283	GT	GAG
(GAG)	 AG	1702-1888	GT	GGG
(GAG)	 AG	1912-2116	GT	GGG
(GAG)	 AG	2287-2443	GT	GAG
(GAG)	 AG	2525-2809	GT	GAG
(GAG)	 AG	2967-3094	GT	TAG
-recovered snap_scaffold_812-snap.1-T1, internal, 822, 929
-recovered snap_scaffold_812-snap.1-T1, internal, 1024, 1103
-recovered snap_scaffold_812-snap.1-T1, internal, 1191, 1283
-recovered snap_scaffold_812-snap.1-T1, internal, 1702, 1888
-recovered snap_scaffold_812-snap.1-T1, internal, 1912, 2116
-recovered snap_scaffold_812-snap.1-T1, internal, 2287, 2443
-recovered snap_scaffold_812-snap.1-T1, internal, 2525, 2809
-recovered snap_scaffold_812-snap.1-T1, internal, 2967, 3094

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4356
-exon list size: 18


building trellis

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10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support