-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_811

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3374, 3436
Sorry, prediction GlimmerHMM_glimmerT_62255-T1 fails validation.
(ATG)	 CC	894-973	GT	AAG
(GTA)	 AG	2281-2399	GT	TGG
(AGG)	 AG	3374-3436	GT	GGG
-recovered GlimmerHMM_glimmerT_62255-T1, initial, 894, 973
-recovered GlimmerHMM_glimmerT_62255-T1, internal, 2281, 2399
-recovered GlimmerHMM_glimmerT_62255-T1, internal, 3374, 3436
Couldn't classify 444, 583
Couldn't classify 2281, 2399
Sorry, prediction snap_scaffold_811-snap.1-T1 fails validation.
(ATT)	 AG	444-583	GT	TGG
(TGG)	 AG	853-973	GT	AAG
(GTA)	 AG	2281-2399	GT	TGG
-recovered snap_scaffold_811-snap.1-T1, internal, 444, 583
-recovered snap_scaffold_811-snap.1-T1, internal, 853, 973
-recovered snap_scaffold_811-snap.1-T1, internal, 2281, 2399
Valid prediction for GlimmerHMM_glimmerT_62254-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62254-T1 444-594-terminal-1 is invalid.
Couldn't classify 444, 583
Sorry, prediction Augustus_model.g41386.t1 fails validation.
(ATT)	 AG	444-583	GT	TGG
(TGG)	 AG	853-973	GT	AAG
(GTA)	 AG	2281-2419	CT	GAC
-recovered Augustus_model.g41386.t1, terminal, 2281, 2419
-recovered Augustus_model.g41386.t1, internal, 444, 583
-recovered Augustus_model.g41386.t1, internal, 853, 973

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2473, 2557
Sorry, prediction GeneMark_model.108426_t fails validation.
(ATG)	 TG	1969-2036	GT	GGG
(GAT)	 AG	2072-2170	GT	AAG
(AGA)	 AG	2205-2261	GT	GAG
(GAC)	 AG	2297-2449	GT	GAG
(AGA)	 AG	2473-2557	GT	AGG
-recovered GeneMark_model.108426_t, initial, 1969, 2036
-recovered GeneMark_model.108426_t, internal, 2072, 2170
-recovered GeneMark_model.108426_t, internal, 2205, 2261
-recovered GeneMark_model.108426_t, internal, 2297, 2449
-recovered GeneMark_model.108426_t, internal, 2473, 2557
Couldn't classify 1938, 2036
Sorry, prediction snap_scaffold_811-snap.2-T1 fails validation.
(TCA)	 AG	1938-2036	GT	GGG
(GAT)	 AG	2072-2145	GT	AGG
(CGT)	 AG	3492-3622	AT	AGA
-recovered snap_scaffold_811-snap.2-T1, terminal, 3492, 3622
-recovered snap_scaffold_811-snap.2-T1, internal, 1938, 2036
-recovered snap_scaffold_811-snap.2-T1, internal, 2072, 2145

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2399, rend_intergenic: 735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4356
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2399, rend_intergenic: 735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support