-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_810

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_810-snap.1-T1
Couldn't classify 1182, 1800
Sorry, prediction GeneMark_model.108424_t fails validation.
(CGA)	 AG	1182-1800	GT	AGG
(GAC)	 AG	2958-3041	GT	AGG
(CTG)	 AG	3070-3096	GA	AGG
-recovered GeneMark_model.108424_t, terminal, 3070, 3096
-recovered GeneMark_model.108424_t, internal, 1182, 1800
-recovered GeneMark_model.108424_t, internal, 2958, 3041
Couldn't classify 3702, 3935
Sorry, prediction snap_scaffold_810-snap.2-T1 fails validation.
(ATG)	 TA	2830-2835	GT	CGG
(AAG)	 AG	2892-3041	GT	AGG
(CGC)	 AG	3702-3935	GT	AGG
-recovered snap_scaffold_810-snap.2-T1, initial, 2830, 2835
-recovered snap_scaffold_810-snap.2-T1, internal, 2892, 3041
-recovered snap_scaffold_810-snap.2-T1, internal, 3702, 3935
Couldn't classify 3702, 3935
Sorry, prediction GlimmerHMM_glimmerT_62253-T1 fails validation.
(ATG)	 GC	1204-1800	GT	AGG
(GAC)	 AG	2958-3041	GT	AGG
(CGC)	 AG	3702-3935	GT	AGG
-recovered GlimmerHMM_glimmerT_62253-T1, initial, 1204, 1800
-recovered GlimmerHMM_glimmerT_62253-T1, internal, 2958, 3041
-recovered GlimmerHMM_glimmerT_62253-T1, internal, 3702, 3935
Valid prediction for HiQ_model.g41385.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 46, 57
Sorry, prediction GeneMark_model.108425_t fails validation.
(AGG)	 AG	46-57	GT	AGG
(ACA)	 AG	81-112	GT	GGG
(GTT)	 AG	410-521	GT	CAG
(GTC)	 AG	568-708	GT	AGG
(GGG)	 AG	731-817	GC	GAG
(TTT)	 AG	844-879	GT	CAG
(GGG)	 AG	901-942	GT	GGG
(AGA)	 AG	969-1206	AT	AAA
-recovered GeneMark_model.108425_t, terminal, 969, 1206
-recovered GeneMark_model.108425_t, internal, 46, 57
-recovered GeneMark_model.108425_t, internal, 81, 112
-recovered GeneMark_model.108425_t, internal, 410, 521
-recovered GeneMark_model.108425_t, internal, 568, 708
-recovered GeneMark_model.108425_t, internal, 731, 817
-recovered GeneMark_model.108425_t, internal, 844, 879
-recovered GeneMark_model.108425_t, internal, 901, 942
Valid prediction for snap_scaffold_810-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3935, rend_intergenic: 2901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4358
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3935, rend_intergenic: 2901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support