-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_81

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106456_t
Valid prediction for snap_scaffold_81-snap.4-T1
Valid prediction for snap_scaffold_81-snap.2-T1
Couldn't classify 19841, 19900
Sorry, prediction GeneMark_model.106460_t fails validation.
(ATG)	 AC	17353-17368	GT	CAG
(GGC)	 AG	17462-17708	GT	GGG
(ACA)	 AG	17733-17795	GT	GCG
(AGG)	 AG	17951-17995	GT	CTG
(GCG)	 AG	18048-18080	GT	GAG
(AGA)	 AG	18214-18238	GT	AGG
(CCA)	 AG	18374-18984	GT	ATG
(GCT)	 AG	19037-19069	GT	AGG
(GCC)	 AG	19841-19900	GT	TGG
-recovered GeneMark_model.106460_t, initial, 17353, 17368
-recovered GeneMark_model.106460_t, internal, 17462, 17708
-recovered GeneMark_model.106460_t, internal, 17733, 17795
-recovered GeneMark_model.106460_t, internal, 17951, 17995
-recovered GeneMark_model.106460_t, internal, 18048, 18080
-recovered GeneMark_model.106460_t, internal, 18214, 18238
-recovered GeneMark_model.106460_t, internal, 18374, 18984
-recovered GeneMark_model.106460_t, internal, 19037, 19069
-recovered GeneMark_model.106460_t, internal, 19841, 19900
Valid prediction for GlimmerHMM_glimmerT_61226-T1
Valid prediction for GeneMark_model.106458_t
Valid prediction for GlimmerHMM_glimmerT_61227-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_81-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_61229-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61229-T1 83-239-terminal-1 is invalid.
Valid prediction for GeneMark_model.106459_t
Couldn't classify 19702, 19752
Sorry, prediction snap_scaffold_81-snap.1-T1 fails validation.
(ATG)	 TC	19043-19125	GT	GGG
(TCC)	 AG	19457-19559	GT	TGG
(AGA)	 AG	19702-19752	GT	AGG
-recovered snap_scaffold_81-snap.1-T1, initial, 19043, 19125
-recovered snap_scaffold_81-snap.1-T1, internal, 19457, 19559
-recovered snap_scaffold_81-snap.1-T1, internal, 19702, 19752
Valid prediction for GeneMark_model.106455_t
Valid prediction for GeneMark_model.106454_t
Valid prediction for GlimmerHMM_glimmerT_61225-T1
Valid prediction for GeneMark_model.106457_t
Couldn't classify 19698, 19752
Sorry, prediction Augustus_model.g40726.t1 fails validation.
(ATG)	 AA	18788-18869	GT	AGG
(GAA)	 AG	19050-19125	GT	GGG
(TCC)	 AG	19457-19559	GT	TGG
(CTA)	 AG	19698-19752	GT	AGG
-recovered Augustus_model.g40726.t1, initial, 18788, 18869
-recovered Augustus_model.g40726.t1, internal, 19050, 19125
-recovered Augustus_model.g40726.t1, internal, 19457, 19559
-recovered Augustus_model.g40726.t1, internal, 19698, 19752
Valid prediction for GlimmerHMM_glimmerT_61228-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17113, rend_intergenic: 2559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18984, rend_intergenic: 17636  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 19956
-exon list size: 103


building trellis

1.0    
1.9    
2.9    
3.8    
4.8    
5.7    
6.7    
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8.6    
9.5    
10.5    
11.4    
12.4    
13.3    
14.3    
15.2    
16.2    
17.1    
18.1    
19.0    
20.0    
21.0    
21.9    
22.9    
23.8    
24.8    
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26.7    
27.6    
28.6    
29.5    
30.5    
31.4    
32.4    
33.3    
34.3    
35.2    
36.2    
37.1    
38.1    
39.0    
40.0    
41.0    
41.9    
42.9    
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44.8    
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46.7    
47.6    
48.6    
49.5    
50.5    
51.4    
52.4    
53.3    
54.3    
55.2    
56.2    
57.1    
58.1    
59.0    
60.0    
61.0    
61.9    
62.9    
63.8    
64.8    
65.7    
66.7    
67.6    
68.6    
69.5    
70.5    
71.4    
72.4    
73.3    
74.3    
75.2    
76.2    
77.1    
78.1    
79.0    
80.0    
81.0    
81.9    
82.9    
83.8    
84.8    
85.7    
86.7    
87.6    
88.6    
89.5    
90.5    
91.4    
92.4    
93.3    
94.3    
95.2    
96.2    
97.1    
98.1    
99.0    
-found 6 predictions from path traversal
Error with prediction: snap lend_intergenic: 17113, rend_intergenic: 2559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18984, rend_intergenic: 17636  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support