-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_809

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62252-T1
Couldn't classify 691, 877
Couldn't classify 3966, 4175
Sorry, prediction GeneMark_model.108423_t fails validation.
(GTG)	 AG	691-877	GT	TGG
(AGT)	 AG	1192-1264	GT	TTG
(GGG)	 AG	3966-4175	GT	CAG
-recovered GeneMark_model.108423_t, internal, 691, 877
-recovered GeneMark_model.108423_t, internal, 1192, 1264
-recovered GeneMark_model.108423_t, internal, 3966, 4175
Valid prediction for Augustus_model.g41384.t1
Couldn't classify 1441, 1500
Sorry, prediction snap_scaffold_809-snap.1-T1 fails validation.
(ATG)	 TC	513-617	GT	AAG
(GTG)	 AG	691-887	GT	AGG
(CCG)	 AG	1441-1500	GT	AGG
-recovered snap_scaffold_809-snap.1-T1, initial, 513, 617
-recovered snap_scaffold_809-snap.1-T1, internal, 691, 887
-recovered snap_scaffold_809-snap.1-T1, internal, 1441, 1500

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4366
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support