-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_806

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1006, 1206
Sorry, prediction snap_scaffold_806-snap.2-T1 fails validation.
(AGG)	 AG	1006-1206	GT	ACG
(AGG)	 AG	1945-2186	GG	GAG
-recovered snap_scaffold_806-snap.2-T1, terminal, 1945, 2186
-recovered snap_scaffold_806-snap.2-T1, internal, 1006, 1206
Valid prediction for GeneMark_model.108422_t
Couldn't classify 9, 62
Sorry, prediction GeneMark_model.108420_t fails validation.
(GAG)	 AG	9-62	GT	GAG
(TAC)	 AG	480-629	GT	CAG
(CGC)	 AG	755-769	GC	GAG
(AGC)	 AG	792-815	GT	GGG
(AAT)	 AG	839-844	GT	GGG
(AGG)	 AG	878-920	AA	GAA
-recovered GeneMark_model.108420_t, terminal, 878, 920
-recovered GeneMark_model.108420_t, internal, 9, 62
-recovered GeneMark_model.108420_t, internal, 480, 629
-recovered GeneMark_model.108420_t, internal, 755, 769
-recovered GeneMark_model.108420_t, internal, 792, 815
-recovered GeneMark_model.108420_t, internal, 839, 844
Couldn't classify 1006, 1170
Sorry, prediction Augustus_model.g41382.t1 fails validation.
(AGG)	 AG	1006-1170	GT	TGG
(AGG)	 AG	1945-2186	GG	GAG
-recovered Augustus_model.g41382.t1, terminal, 1945, 2186
-recovered Augustus_model.g41382.t1, internal, 1006, 1170

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62251-T1
Valid prediction for GeneMark_model.108421_t
Valid prediction for snap_scaffold_806-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3093, rend_intergenic: 1006  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4378
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3093, rend_intergenic: 1006  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support