-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_805

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4107, 4286
Sorry, prediction GeneMark_model.108419_t fails validation.
(ATG)	 GG	3964-4010	GT	GAG
(GAG)	 AG	4107-4286	GT	AGG
-recovered GeneMark_model.108419_t, initial, 3964, 4010
-recovered GeneMark_model.108419_t, internal, 4107, 4286
Couldn't classify 302, 343
Sorry, prediction snap_scaffold_805-snap.1-T1 fails validation.
(ATA)	 AG	302-343	GT	AGG
(ATT)	 AG	693-894	GT	GGG
(AGG)	 AG	3588-3779	GA	GAG
-recovered snap_scaffold_805-snap.1-T1, terminal, 3588, 3779
-recovered snap_scaffold_805-snap.1-T1, internal, 302, 343
-recovered snap_scaffold_805-snap.1-T1, internal, 693, 894
Valid prediction for GeneMark_model.108418_t
Couldn't classify 338, 343
Sorry, prediction GeneMark_model.108416_t fails validation.
(GAG)	 AG	338-343	GT	AGG
(CAC)	 AG	374-390	GT	TGG
(GGA)	 AG	727-745	GT	GGG
(CAG)	 AG	766-795	GT	GGG
(CAG)	 AG	816-896	GT	GTG
(GGC)	 AG	938-946	GT	GTG
(GGC)	 AG	988-996	GT	GTG
(GGC)	 AG	1038-1070	GT	GGG
(GGG)	 AG	1093-1119	GT	GGG
(GGG)	 AG	1142-1178	GT	AGG
(GGC)	 AG	1202-1218	GT	GGG
(AGC)	 AG	1240-1266	GT	GAG
(GGT)	 AG	1310-1360	GT	GTG
(GGG)	 AG	1381-1410	GT	GTG
(GGG)	 AG	1432-1458	GT	GGG
(GGG)	 AG	1479-1487	GT	GTG
(GCA)	 AG	1526-1561	GT	GGG
(GGC)	 AG	1605-1613	GT	GTG
(GGG)	 AG	1634-1684	GT	GTG
(GGC)	 AG	1726-1785	GT	GTG
(GGG)	 AG	1806-1859	GT	GGG
(GGG)	 AG	1882-1905	GT	CTG
(GGA)	 AG	2207-2222	GA	AAG
-recovered GeneMark_model.108416_t, terminal, 2207, 2222
-recovered GeneMark_model.108416_t, internal, 338, 343
-recovered GeneMark_model.108416_t, internal, 374, 390
-recovered GeneMark_model.108416_t, internal, 727, 745
-recovered GeneMark_model.108416_t, internal, 766, 795
-recovered GeneMark_model.108416_t, internal, 816, 896
-recovered GeneMark_model.108416_t, internal, 938, 946
-recovered GeneMark_model.108416_t, internal, 988, 996
-recovered GeneMark_model.108416_t, internal, 1038, 1070
-recovered GeneMark_model.108416_t, internal, 1093, 1119
-recovered GeneMark_model.108416_t, internal, 1142, 1178
-recovered GeneMark_model.108416_t, internal, 1202, 1218
-recovered GeneMark_model.108416_t, internal, 1240, 1266
-recovered GeneMark_model.108416_t, internal, 1310, 1360
-recovered GeneMark_model.108416_t, internal, 1381, 1410
-recovered GeneMark_model.108416_t, internal, 1432, 1458
-recovered GeneMark_model.108416_t, internal, 1479, 1487
-recovered GeneMark_model.108416_t, internal, 1526, 1561
-recovered GeneMark_model.108416_t, internal, 1605, 1613
-recovered GeneMark_model.108416_t, internal, 1634, 1684
-recovered GeneMark_model.108416_t, internal, 1726, 1785
-recovered GeneMark_model.108416_t, internal, 1806, 1859
-recovered GeneMark_model.108416_t, internal, 1882, 1905

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108417_t
Couldn't classify 32, 151
Couldn't classify 1579, 1892
Sorry, prediction snap_scaffold_805-snap.2-T1 fails validation.
(GTA)	 AG	32-151	GT	AGG
(ATT)	 AG	1579-1892	GT	ATG
-recovered snap_scaffold_805-snap.2-T1, internal, 32, 151
-recovered snap_scaffold_805-snap.2-T1, internal, 1579, 1892

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3779, rend_intergenic: 2489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4380
-exon list size: 64


building trellis

1.5    
3.0    
4.5    
6.1    
7.6    
9.1    
10.6    
12.1    
13.6    
15.2    
16.7    
18.2    
19.7    
21.2    
22.7    
24.2    
25.8    
27.3    
28.8    
30.3    
31.8    
33.3    
34.8    
36.4    
37.9    
39.4    
40.9    
42.4    
43.9    
45.5    
47.0    
48.5    
50.0    
51.5    
53.0    
54.5    
56.1    
57.6    
59.1    
60.6    
62.1    
63.6    
65.2    
66.7    
68.2    
69.7    
71.2    
72.7    
74.2    
75.8    
77.3    
78.8    
80.3    
81.8    
83.3    
84.8    
86.4    
87.9    
89.4    
90.9    
92.4    
93.9    
95.5    
97.0    
98.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3779, rend_intergenic: 2489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support