-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_804

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_804-snap.2-T1
Couldn't classify 2228, 2351
Sorry, prediction snap_scaffold_804-snap.1-T1 fails validation.
(ATG)	 AG	1273-1376	GT	GTG
(AGG)	 AG	2228-2351	GT	CGG
-recovered snap_scaffold_804-snap.1-T1, initial, 1273, 1376
-recovered snap_scaffold_804-snap.1-T1, internal, 1273, 1376
-recovered snap_scaffold_804-snap.1-T1, internal, 2228, 2351
Valid prediction for GeneMark_model.108414_t
Valid prediction for snap_scaffold_804-snap.3-T1
add_exon() Sorry, snap_scaffold_804-snap.3-T1 258-441-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62250-T1
Couldn't classify 281, 334
Sorry, prediction GeneMark_model.108415_t fails validation.
(AGG)	 AG	281-334	GT	CAG
(GAG)	 AG	373-423	GT	AAG
(AAG)	 AG	444-584	GT	GAG
(AGG)	 AG	605-640	GT	CAG
(AGG)	 AG	982-999	GT	AGG
(GGT)	 AG	1025-1099	GT	GGG
(GGG)	 AG	1139-1313	GG	GAG
-recovered GeneMark_model.108415_t, terminal, 1139, 1313
-recovered GeneMark_model.108415_t, internal, 281, 334
-recovered GeneMark_model.108415_t, internal, 373, 423
-recovered GeneMark_model.108415_t, internal, 444, 584
-recovered GeneMark_model.108415_t, internal, 605, 640
-recovered GeneMark_model.108415_t, internal, 982, 999
-recovered GeneMark_model.108415_t, internal, 1025, 1099

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4389
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support