-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_802

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 178, 195
Sorry, prediction GeneMark_model.108409_t fails validation.
(AAA)	 AG	178-195	GT	ATG
(ATC)	 AG	358-396	GT	GGG
(AAA)	 AG	566-574	GC	GAG
(AAA)	 AG	598-684	GT	ATG
(AGA)	 AG	831-887	GT	CTG
(ACA)	 AG	922-936	GT	GAG
(GGA)	 AG	960-1038	AA	GAA
-recovered GeneMark_model.108409_t, terminal, 960, 1038
-recovered GeneMark_model.108409_t, internal, 178, 195
-recovered GeneMark_model.108409_t, internal, 358, 396
-recovered GeneMark_model.108409_t, internal, 566, 574
-recovered GeneMark_model.108409_t, internal, 598, 684
-recovered GeneMark_model.108409_t, internal, 831, 887
-recovered GeneMark_model.108409_t, internal, 922, 936
Valid prediction for GeneMark_model.108411_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 207, 218
Sorry, prediction GeneMark_model.108412_t fails validation.
(GAG)	 AG	207-218	GT	AGG
(CTC)	 AG	338-508	GT	GTG
(GGA)	 AG	530-539	GA	GAG
-recovered GeneMark_model.108412_t, terminal, 530, 539
-recovered GeneMark_model.108412_t, internal, 207, 218
-recovered GeneMark_model.108412_t, internal, 338, 508
Couldn't classify 180, 218
Sorry, prediction GlimmerHMM_glimmerT_62248-T1 fails validation.
(CTG)	 AG	180-218	GT	AGG
(GCC)	 AG	312-512	GA	GAG
-recovered GlimmerHMM_glimmerT_62248-T1, terminal, 312, 512
-recovered GlimmerHMM_glimmerT_62248-T1, internal, 180, 218
Valid prediction for GeneMark_model.108410_t
Couldn't classify 180, 218
Couldn't classify 1533, 1571
Sorry, prediction snap_scaffold_802-snap.1-T1 fails validation.
(CTG)	 AG	180-218	GT	AGG
(GCC)	 AG	312-506	GT	AGG
(AAC)	 AG	1533-1571	GT	TGG
-recovered snap_scaffold_802-snap.1-T1, internal, 180, 218
-recovered snap_scaffold_802-snap.1-T1, internal, 312, 506
-recovered snap_scaffold_802-snap.1-T1, internal, 1533, 1571

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4402
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support