-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_800

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2384, 2545
Sorry, prediction snap_scaffold_800-snap.1-T1 fails validation.
(ATG)	 TC	2092-2132	GT	CAG
(AGA)	 AG	2384-2545	GT	AGG
-recovered snap_scaffold_800-snap.1-T1, initial, 2092, 2132
-recovered snap_scaffold_800-snap.1-T1, internal, 2384, 2545
Couldn't classify 37, 93
Sorry, prediction GeneMark_model.108406_t fails validation.
(AAG)	 AG	37-93	GT	AGG
(GGA)	 AG	150-215	GT	GAG
(TGA)	 AG	238-258	GT	GGG
(TGA)	 AG	669-683	GT	GAG
(GAG)	 AG	711-746	GT	GAG
(AAA)	 AG	772-811	GT	ATG
(GTT)	 AG	845-864	GT	GTG
(GGA)	 AG	1662-1694	GT	AAG
(GGG)	 AG	1719-1800	GG	GAG
-recovered GeneMark_model.108406_t, terminal, 1719, 1800
-recovered GeneMark_model.108406_t, internal, 37, 93
-recovered GeneMark_model.108406_t, internal, 150, 215
-recovered GeneMark_model.108406_t, internal, 238, 258
-recovered GeneMark_model.108406_t, internal, 669, 683
-recovered GeneMark_model.108406_t, internal, 711, 746
-recovered GeneMark_model.108406_t, internal, 772, 811
-recovered GeneMark_model.108406_t, internal, 845, 864
-recovered GeneMark_model.108406_t, internal, 1662, 1694

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 48, 59
Sorry, prediction GeneMark_model.108407_t fails validation.
(GAG)	 AG	48-59	GT	AGG
(GGT)	 AG	81-110	GT	ACG
(AGG)	 AG	531-545	GT	AGG
(AGA)	 AG	575-643	GT	AGG
(GCT)	 AG	670-705	GT	AGG
(GGG)	 AG	732-740	GT	GAG
(AGG)	 AG	772-801	GT	AGG
(GGG)	 AG	827-841	GT	AGG
(GTG)	 AG	864-899	GT	GGG
(GGG)	 AG	944-961	GT	GCG
(AGA)	 AG	1560-1568	GT	GAG
(TGA)	 AG	1594-1614	GT	GAG
(AGA)	 AG	1646-1906	GT	CCG
(GGT)	 AG	2006-2051	AC	GAA
-recovered GeneMark_model.108407_t, terminal, 531, 545
-recovered GeneMark_model.108407_t, terminal, 2006, 2051
-recovered GeneMark_model.108407_t, internal, 48, 59
-recovered GeneMark_model.108407_t, internal, 81, 110
-recovered GeneMark_model.108407_t, internal, 531, 545
-recovered GeneMark_model.108407_t, internal, 575, 643
-recovered GeneMark_model.108407_t, internal, 670, 705
-recovered GeneMark_model.108407_t, internal, 732, 740
-recovered GeneMark_model.108407_t, internal, 772, 801
-recovered GeneMark_model.108407_t, internal, 827, 841
-recovered GeneMark_model.108407_t, internal, 864, 899
-recovered GeneMark_model.108407_t, internal, 944, 961
-recovered GeneMark_model.108407_t, internal, 1560, 1568
-recovered GeneMark_model.108407_t, internal, 1594, 1614
-recovered GeneMark_model.108407_t, internal, 1646, 1906

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4403
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support