-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_80

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_80-snap.2-T1
Couldn't classify 20030, 20340
Sorry, prediction Augustus_model.g40725.t1 fails validation.
(ATG)	 CA	20030-20340		GA
Valid prediction for GeneMark_model.106451_t
Valid prediction for GeneMark_model.106447_t
Valid prediction for GeneMark_model.106453_t
Couldn't classify 20030, 20340
Sorry, prediction GlimmerHMM_glimmerT_61224-T1 fails validation.
(ATG)	 CA	20030-20340		GA
Couldn't classify 353, 361
Couldn't classify 720, 751
Sorry, prediction GeneMark_model.106445_t fails validation.
(AAA)	 AG	353-361	GT	GGG
(AAA)	 AG	451-462	GT	GGG
(AAA)	 AG	498-506	GT	GGG
(AGA)	 AG	560-586	GT	GGG
(AGA)	 AG	628-654	GT	GGG
(GGT)	 AG	676-690	GT	GAG
(GGG)	 AG	720-751	GT	GGG
-recovered GeneMark_model.106445_t, internal, 353, 361
-recovered GeneMark_model.106445_t, internal, 451, 462
-recovered GeneMark_model.106445_t, internal, 498, 506
-recovered GeneMark_model.106445_t, internal, 560, 586
-recovered GeneMark_model.106445_t, internal, 628, 654
-recovered GeneMark_model.106445_t, internal, 676, 690
-recovered GeneMark_model.106445_t, internal, 720, 751
Valid prediction for GeneMark_model.106449_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_80-snap.1-T1
Valid prediction for GeneMark_model.106448_t
Valid prediction for GeneMark_model.106450_t
Valid prediction for snap_scaffold_80-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_61223-T1
Valid prediction for GlimmerHMM_glimmerT_61222-T1
Valid prediction for Augustus_model.g40724.t1
Valid prediction for GeneMark_model.106452_t
Valid prediction for GeneMark_model.106446_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14314, rend_intergenic: 13110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 20340
-exon list size: 81


building trellis

1.2    
2.4    
3.6    
4.8    
6.0    
7.2    
8.4    
9.6    
10.8    
12.0    
13.3    
14.5    
15.7    
16.9    
18.1    
19.3    
20.5    
21.7    
22.9    
24.1    
25.3    
26.5    
27.7    
28.9    
30.1    
31.3    
32.5    
33.7    
34.9    
36.1    
37.3    
38.6    
39.8    
41.0    
42.2    
43.4    
44.6    
45.8    
47.0    
48.2    
49.4    
50.6    
51.8    
53.0    
54.2    
55.4    
56.6    
57.8    
59.0    
60.2    
61.4    
62.7    
63.9    
65.1    
66.3    
67.5    
68.7    
69.9    
71.1    
72.3    
73.5    
74.7    
75.9    
77.1    
78.3    
79.5    
80.7    
81.9    
83.1    
84.3    
85.5    
86.7    
88.0    
89.2    
90.4    
91.6    
92.8    
94.0    
95.2    
96.4    
97.6    
98.8    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 14314, rend_intergenic: 13110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support