-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_9720390-9958817 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 147857, 147977 Sorry, prediction CodingQuarry_transcript_59615-T1 fails validation. (ATG) GG 144806-144865 GT AGG (GGT) AG 145056-145158 GT TGG (GCG) AG 145367-145452 GT AGG (GTT) AG 145564-145777 GT TAG (TGT) AG 146768-147080 GC GTG (ACC) CA 147857-147977 GT AGG (GAA) AG 148486-148605 GT AGG (GCC) AG 148894-150260 GT AGG (CAG) AG 150357-150552 GA GAG -recovered CodingQuarry_transcript_59615-T1, initial, 144806, 144865 -recovered CodingQuarry_transcript_59615-T1, terminal, 150357, 150552 -recovered CodingQuarry_transcript_59615-T1, internal, 145056, 145158 -recovered CodingQuarry_transcript_59615-T1, internal, 145367, 145452 -recovered CodingQuarry_transcript_59615-T1, internal, 145564, 145777 -recovered CodingQuarry_transcript_59615-T1, internal, 146768, 147080 -recovered CodingQuarry_transcript_59615-T1, internal, 148486, 148605 -recovered CodingQuarry_transcript_59615-T1, internal, 148894, 150260 Valid prediction for snap_scaffold_8-snap.1937-T1 Valid prediction for snap_scaffold_8-snap.1912-T1 Valid prediction for GlimmerHMM_glimmerT_20794-T1 Valid prediction for GlimmerHMM_glimmerT_20801-T1 Valid prediction for GlimmerHMM_glimmerT_20813-T1 Valid prediction for GlimmerHMM_glimmerT_20819-T1 Valid prediction for GeneMark_model.35527_t Valid prediction for HiQ_model.g13901.t1 Valid prediction for Augustus_model.g13928.t1 Valid prediction for GeneMark_model.35525_t Valid prediction for CodingQuarry_transcript_59623-T1 Valid prediction for CodingQuarry_transcript_59611-T1 Valid prediction for snap_scaffold_8-snap.1961-T1 Valid prediction for GeneMark_model.35540_t Valid prediction for Augustus_model.g13916.t1 Valid prediction for pasa_asmbl_52119.p1 Valid prediction for snap_scaffold_8-snap.1938-T1 Valid prediction for GeneMark_model.35546_t Valid prediction for CodingQuarry_transcript_59622-T1 Valid prediction for Augustus_model.g13917.t1 Valid prediction for pasa_asmbl_52102.p1 Valid prediction for snap_scaffold_8-snap.1933-T1 Valid prediction for GlimmerHMM_glimmerT_20797-T1 Valid prediction for GeneMark_model.35520_t Valid prediction for Augustus_model.g13914.t1 Valid prediction for snap_scaffold_8-snap.1921-T1 Valid prediction for snap_scaffold_8-snap.1953-T1 Valid prediction for CodingQuarry_transcript_59616-T1 Valid prediction for pasa_asmbl_52115.p1 Valid prediction for snap_scaffold_8-snap.1934-T1 Valid prediction for snap_scaffold_8-snap.1910-T1 Valid prediction for HiQ_model.g13913.t1 Valid prediction for snap_scaffold_8-snap.1945-T1 Valid prediction for Augustus_model.g13910.t1 Valid prediction for pasa_asmbl_52089.p1 Valid prediction for GlimmerHMM_glimmerT_20803-T1 Valid prediction for GeneMark_model.35530_t Valid prediction for GeneMark_model.35534_t Valid prediction for GeneMark_model.35545_t Valid prediction for GlimmerHMM_glimmerT_20785-T1 Valid prediction for CodingQuarry_transcript_59621-T1 Valid prediction for snap_scaffold_8-snap.1927-T1 Valid prediction for GeneMark_model.35558_t Valid prediction for snap_scaffold_8-snap.1958-T1 Valid prediction for GeneMark_model.35544_t Valid prediction for snap_scaffold_8-snap.1936-T1 Valid prediction for GlimmerHMM_glimmerT_20800-T1 Valid prediction for pasa_asmbl_52121.p1 Valid prediction for snap_scaffold_8-snap.1916-T1 Valid prediction for snap_scaffold_8-snap.1917-T1 Valid prediction for Augustus_model.g13933.t1 Valid prediction for CodingQuarry_transcript_59624-T1 Valid prediction for snap_scaffold_8-snap.1939-T1 Valid prediction for snap_scaffold_8-snap.1930-T1 Valid prediction for CodingQuarry_transcript_59617-T1 Valid prediction for CodingQuarry_transcript_59610-T1 Valid prediction for snap_scaffold_8-snap.1924-T1 Valid prediction for Augustus_model.g13921.t1 Valid prediction for GlimmerHMM_glimmerT_20806-T1 Valid prediction for CodingQuarry_transcript_59614-T1 Couldn't classify 1805, 1889 Sorry, prediction pasa_asmbl_52087.p1 fails validation. (GTG) TC 1805-1889 GT GGG (ATA) AG 2026-2114 GT AGG (GAC) AG 3210-3267 GT AGG (AGA) AG 3407-3498 GT AGG (GAA) AG 3671-3770 GT TGG (GTG) AG 4065-4232 GT ATG (TGG) AG 4412-4485 GT AAG (CAA) AG 4645-4779 CA GAC -recovered pasa_asmbl_52087.p1, terminal, 4645, 4779 -recovered pasa_asmbl_52087.p1, internal, 2026, 2114 -recovered pasa_asmbl_52087.p1, internal, 3210, 3267 -recovered pasa_asmbl_52087.p1, internal, 3407, 3498 -recovered pasa_asmbl_52087.p1, internal, 3671, 3770 -recovered pasa_asmbl_52087.p1, internal, 4065, 4232 -recovered pasa_asmbl_52087.p1, internal, 4412, 4485 Valid prediction for GeneMark_model.35528_t Valid prediction for HiQ_model.g13918.t1 Valid prediction for GlimmerHMM_glimmerT_20798-T1 Valid prediction for Augustus_model.g13911.t1 Valid prediction for Augustus_model.g13919.t1 Valid prediction for GeneMark_model.35532_t Valid prediction for GeneMark_model.35542_t Valid prediction for snap_scaffold_8-snap.1926-T1 Valid prediction for HiQ_model.g13922.t1 Valid prediction for snap_scaffold_8-snap.1943-T1 Couldn't classify 147857, 147977 Sorry, prediction CodingQuarry_transcript_59613-T1 fails validation. (ATG) GG 144806-144865 GT AGG (GGT) AG 145056-145158 GT TGG (GCG) AG 145367-145452 GT AGG (GTT) AG 145564-145777 GT TAG (CAG) AG 145875-145970 GT AGG (TGT) AG 146768-147080 GC GTG (ACC) CA 147857-147977 GT AGG (GCC) AG 148894-150260 GT AGG (CAG) AG 150360-150552 GA GAG -recovered CodingQuarry_transcript_59613-T1, initial, 144806, 144865 -recovered CodingQuarry_transcript_59613-T1, terminal, 150360, 150552 -recovered CodingQuarry_transcript_59613-T1, internal, 145056, 145158 -recovered CodingQuarry_transcript_59613-T1, internal, 145367, 145452 -recovered CodingQuarry_transcript_59613-T1, internal, 145564, 145777 -recovered CodingQuarry_transcript_59613-T1, internal, 145875, 145970 -recovered CodingQuarry_transcript_59613-T1, internal, 146768, 147080 -recovered CodingQuarry_transcript_59613-T1, internal, 148894, 150260 Valid prediction for GlimmerHMM_glimmerT_20808-T1 Valid prediction for HiQ_model.g13912.t1 Valid prediction for GlimmerHMM_glimmerT_20807-T1 Valid prediction for GeneMark_model.35549_t Valid prediction for snap_scaffold_8-snap.1944-T1 Valid prediction for snap_scaffold_8-snap.1914-T1 Valid prediction for GeneMark_model.35557_t Valid prediction for GeneMark_model.35560_t Valid prediction for GeneMark_model.35553_t Valid prediction for GeneMark_model.35537_t Valid prediction for GlimmerHMM_glimmerT_20783-T1 Valid prediction for GeneMark_model.35556_t Valid prediction for GeneMark_model.35551_t Valid prediction for snap_scaffold_8-snap.1957-T1 Valid prediction for Augustus_model.g13915.t1 Valid prediction for snap_scaffold_8-snap.1928-T1 Valid prediction for GlimmerHMM_glimmerT_20795-T1 Valid prediction for HiQ_model.g13923.t1 Valid prediction for Augustus_model.g13909.t1 Valid prediction for Augustus_model.g13931.t1 Valid prediction for GeneMark_model.35550_t Couldn't classify 138071, 138871 Sorry, prediction pasa_asmbl_52098.p1 fails validation. (CCG) CT 138071-138871 TG AGT Valid prediction for GlimmerHMM_glimmerT_20786-T1 Couldn't classify 99015, 99110 Sorry, prediction pasa_asmbl_52092.p1 fails validation. (CCC) CC 99015-99110 GT CGG (GCT) AG 99524-99610 GT TGG (ATG) AG 99711-99830 GT AGG (ATC) AG 99942-100190 GT GGG (GAA) AG 100287-100364 GT CGG (CCT) AG 100484-100538 GT CAG (ACA) AG 100654-100712 GT CAG (GCT) AG 100845-100910 GT CGG (GCT) AG 101180-101409 GT ACG (GGA) AG 101565-101686 GT CGG (CCT) AG 102170-102240 GT TGG (GAC) AG 102362-102457 GT AGG (ACT) AG 102632-102705 GT CAG (TCT) AG 102838-102898 GT AGG (GGA) AG 102980-103039 GT AGG (TTG) AG 103233-103340 GT AGG (ACG) AG 103428-103524 GT TGG (GGT) AG 103684-103756 GT TGG (CTT) AG 103857-103959 TA GAT -recovered pasa_asmbl_52092.p1, initial, 99711, 99830 -recovered pasa_asmbl_52092.p1, terminal, 103857, 103959 -recovered pasa_asmbl_52092.p1, internal, 99524, 99610 -recovered pasa_asmbl_52092.p1, internal, 99711, 99830 -recovered pasa_asmbl_52092.p1, internal, 99942, 100190 -recovered pasa_asmbl_52092.p1, internal, 100287, 100364 -recovered pasa_asmbl_52092.p1, internal, 100484, 100538 -recovered pasa_asmbl_52092.p1, internal, 100654, 100712 -recovered pasa_asmbl_52092.p1, internal, 100845, 100910 -recovered pasa_asmbl_52092.p1, internal, 101180, 101409 -recovered pasa_asmbl_52092.p1, internal, 101565, 101686 -recovered pasa_asmbl_52092.p1, internal, 102170, 102240 -recovered pasa_asmbl_52092.p1, internal, 102362, 102457 -recovered pasa_asmbl_52092.p1, internal, 102632, 102705 -recovered pasa_asmbl_52092.p1, internal, 102838, 102898 -recovered pasa_asmbl_52092.p1, internal, 102980, 103039 -recovered pasa_asmbl_52092.p1, internal, 103233, 103340 -recovered pasa_asmbl_52092.p1, internal, 103428, 103524 -recovered pasa_asmbl_52092.p1, internal, 103684, 103756 Couldn't classify 95061, 95075 Couldn't classify 98868, 98942 Sorry, prediction pasa_asmbl_52094.p1 fails validation. (TTA) GG 95061-95075 GT CGG (ACA) AG 95470-95531 GT AGG (CCA) AG 95710-95812 GT ATG (CCT) AG 96248-96411 GT CAG (AGA) AG 96583-96703 GT AGG (AGC) AG 98868-98942 CC CCC -recovered pasa_asmbl_52094.p1, internal, 95470, 95531 -recovered pasa_asmbl_52094.p1, internal, 95710, 95812 -recovered pasa_asmbl_52094.p1, internal, 96248, 96411 -recovered pasa_asmbl_52094.p1, internal, 96583, 96703 Valid prediction for GeneMark_model.35570_t Valid prediction for Augustus_model.g13907.t1 Valid prediction for CodingQuarry_transcript_59612-T1 Couldn't classify 90639, 92039 Sorry, prediction pasa_asmbl_52090.p1 fails validation. (ATG) GG 90639-92039 GA GGG Valid prediction for CodingQuarry_transcript_59608-T1 Valid prediction for GlimmerHMM_glimmerT_20792-T1 Valid prediction for GlimmerHMM_glimmerT_20796-T1 Valid prediction for GeneMark_model.35561_t Valid prediction for GeneMark_model.35555_t Valid prediction for snap_scaffold_8-snap.1915-T1 Valid prediction for GeneMark_model.35562_t Valid prediction for GlimmerHMM_glimmerT_20787-T1 Valid prediction for snap_scaffold_8-snap.1952-T1 Valid prediction for GeneMark_model.35554_t Valid prediction for GlimmerHMM_glimmerT_20802-T1 Valid prediction for GeneMark_model.35548_t Valid prediction for snap_scaffold_8-snap.1942-T1 Valid prediction for GeneMark_model.35564_t Valid prediction for snap_scaffold_8-snap.1940-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.35529_t Valid prediction for GeneMark_model.35538_t Valid prediction for GeneMark_model.35547_t Valid prediction for snap_scaffold_8-snap.1919-T1 Valid prediction for snap_scaffold_8-snap.1946-T1 Valid prediction for snap_scaffold_8-snap.1948-T1 Valid prediction for pasa_asmbl_53065.p1 Valid prediction for pasa_asmbl_53073.p1 Valid prediction for CodingQuarry_transcript_59633-T1 Valid prediction for snap_scaffold_8-snap.1950-T1 Valid prediction for GlimmerHMM_glimmerT_20784-T1 Couldn't classify 174176, 174274 Couldn't classify 175329, 175397 Sorry, prediction pasa_asmbl_53053.p1 fails validation. (AAC) CT 174176-174274 GT AGG (GAA) AG 174821-174955 GT AGG (GAT) AG 175092-175226 GT AGG (ATG) AG 175329-175397 AA GGA -recovered pasa_asmbl_53053.p1, internal, 174821, 174955 -recovered pasa_asmbl_53053.p1, internal, 175092, 175226 Valid prediction for snap_scaffold_8-snap.1954-T1 Valid prediction for GlimmerHMM_glimmerT_20811-T1 Couldn't classify 56289, 56342 Sorry, prediction pasa_asmbl_53059.p1 fails validation. (GCT) GT 56289-56342 GT AGG (AGT) AG 57607-57760 GT AGG (ACT) AG 57908-58185 GC AGG (CCA) AG 58314-58458 GT TGG (AGG) AG 58609-58901 GA GAG -recovered pasa_asmbl_53059.p1, terminal, 58609, 58901 -recovered pasa_asmbl_53059.p1, internal, 57607, 57760 -recovered pasa_asmbl_53059.p1, internal, 57908, 58185 -recovered pasa_asmbl_53059.p1, internal, 58314, 58458 Valid prediction for snap_scaffold_8-snap.1962-T1 Valid prediction for Augustus_model.g13920.t1 Valid prediction for GeneMark_model.35563_t Couldn't classify 85936, 86165 Sorry, prediction pasa_asmbl_53055.p1 fails validation. (TCT) TT 85936-86165 GT AGG (TCA) AG 86292-86472 GT AGG (GAG) AG 86631-86744 GA GAG -recovered pasa_asmbl_53055.p1, terminal, 86631, 86744 -recovered pasa_asmbl_53055.p1, internal, 86292, 86472 Valid prediction for HiQ_model.g13927.t1 Valid prediction for snap_scaffold_8-snap.1959-T1 Valid prediction for pasa_asmbl_53068.p1 Valid prediction for HiQ_model.g13934.t1 Valid prediction for HiQ_model.g13925.t1 Valid prediction for CodingQuarry_transcript_59628-T1 Valid prediction for Augustus_model.g13929.t1 Valid prediction for GlimmerHMM_glimmerT_20816-T1 Valid prediction for GlimmerHMM_glimmerT_20817-T1 Couldn't classify 83958, 83980 Couldn't classify 84067, 84184 Couldn't classify 84493, 84630 Sorry, prediction pasa_asmbl_53058.p1 fails validation. (GTC) AA 83958-83980 AT AAA (CTA) AC 84067-84184 GT TGG (GTA) AG 84275-84379 GT CGG (CTG) AG 84493-84630 GC AAG -recovered pasa_asmbl_53058.p1, internal, 84275, 84379 -recovered pasa_asmbl_53058.p1, internal, 84493, 84630 Valid prediction for Augustus_model.g13930.t1 Valid prediction for GlimmerHMM_glimmerT_20822-T1 Valid prediction for GeneMark_model.35536_t Valid prediction for GeneMark_model.35535_t Valid prediction for GeneMark_model.35521_t Valid prediction for GeneMark_model.35573_t Valid prediction for GlimmerHMM_glimmerT_20810-T1 Valid prediction for GlimmerHMM_glimmerT_20815-T1 Valid prediction for snap_scaffold_8-snap.1920-T1 Valid prediction for GeneMark_model.35522_t Valid prediction for GlimmerHMM_glimmerT_20804-T1 Valid prediction for snap_scaffold_8-snap.1932-T1 Valid prediction for GlimmerHMM_glimmerT_20788-T1 Couldn't classify 47155, 47164 Sorry, prediction pasa_asmbl_53066.p1 fails validation. (TCA) CA 47155-47164 GT TTG (TAT) AG 47274-47704 GT ACG (GTT) AG 47788-47864 GT AAG (AGT) AG 47981-48065 GC GAG add_exon() Sorry, pasa_asmbl_53066.p1 47788-47864-terminal-2 is invalid. -recovered pasa_asmbl_53066.p1, terminal, 47788, 47864 -recovered pasa_asmbl_53066.p1, terminal, 47981, 48065 -recovered pasa_asmbl_53066.p1, internal, 47274, 47704 -recovered pasa_asmbl_53066.p1, internal, 47788, 47864 -recovered pasa_asmbl_53066.p1, internal, 47981, 48065 Valid prediction for GlimmerHMM_glimmerT_20790-T1 Valid prediction for GlimmerHMM_glimmerT_20818-T1 Valid prediction for GlimmerHMM_glimmerT_20789-T1 Valid prediction for snap_scaffold_8-snap.1911-T1 Valid prediction for GlimmerHMM_glimmerT_20793-T1 Valid prediction for CodingQuarry_transcript_59631-T1 Valid prediction for Augustus_model.g13908.t1 Valid prediction for pasa_asmbl_53060.p1 Valid prediction for snap_scaffold_8-snap.1925-T1 Valid prediction for snap_scaffold_8-snap.1935-T1 Valid prediction for GlimmerHMM_glimmerT_20812-T1 Valid prediction for GeneMark_model.35572_t Valid prediction for snap_scaffold_8-snap.1960-T1 Valid prediction for snap_scaffold_8-snap.1949-T1 Valid prediction for Augustus_model.g13924.t1 Valid prediction for CodingQuarry_transcript_59632-T1 Valid prediction for GeneMark_model.35539_t Valid prediction for CodingQuarry_transcript_59625-T1 Couldn't classify 46246, 46374 Couldn't classify 46817, 47040 Sorry, prediction pasa_asmbl_53067.p1 fails validation. (TTC) TG 46246-46374 GT AGG (GGG) AG 46628-46691 GT AGG (ATG) AG 46817-47040 AC CCA -recovered pasa_asmbl_53067.p1, internal, 46628, 46691 Valid prediction for GlimmerHMM_glimmerT_20823-T1 Valid prediction for GlimmerHMM_glimmerT_20809-T1 Valid prediction for GeneMark_model.35566_t Valid prediction for GeneMark_model.35533_t Valid prediction for GeneMark_model.35531_t Valid prediction for snap_scaffold_8-snap.1951-T1 Valid prediction for snap_scaffold_8-snap.1956-T1 Valid prediction for Augustus_model.g13905.t1 Couldn't classify 19762, 19814 Sorry, prediction pasa_asmbl_53074.p1 fails validation. (TAT) AC 19762-19814 GT AGG (AAT) AG 20163-20374 GT AGG (GTT) AG 20531-20671 GT AGG (ATC) AG 20872-20991 GT TGG (TCA) AG 21105-21245 GT AGG (TCC) AG 21392-21447 GT TGG (GGG) AG 21555-21621 GT TGG (TGG) AG 21703-21787 GT AGG (GTT) AG 21880-21982 GT TAG (CTG) AG 22341-22433 GT AGG (GTG) AG 22544-22676 GT AGG (GCC) AG 22765-22885 GT AGG (GTG) AG 22990-23048 GT CAG (GAG) AG 23156-23292 GT AGG (AAG) AG 23373-23396 TA GAT -recovered pasa_asmbl_53074.p1, terminal, 23373, 23396 -recovered pasa_asmbl_53074.p1, internal, 20163, 20374 -recovered pasa_asmbl_53074.p1, internal, 20531, 20671 -recovered pasa_asmbl_53074.p1, internal, 20872, 20991 -recovered pasa_asmbl_53074.p1, internal, 21105, 21245 -recovered pasa_asmbl_53074.p1, internal, 21392, 21447 -recovered pasa_asmbl_53074.p1, internal, 21555, 21621 -recovered pasa_asmbl_53074.p1, internal, 21703, 21787 -recovered pasa_asmbl_53074.p1, internal, 21880, 21982 -recovered pasa_asmbl_53074.p1, internal, 22341, 22433 -recovered pasa_asmbl_53074.p1, internal, 22544, 22676 -recovered pasa_asmbl_53074.p1, internal, 22765, 22885 -recovered pasa_asmbl_53074.p1, internal, 22990, 23048 -recovered pasa_asmbl_53074.p1, internal, 23156, 23292 Valid prediction for CodingQuarry_transcript_59630-T1 Valid prediction for pasa_asmbl_53072.p1 Valid prediction for HiQ_model.g13902.t1 Valid prediction for Augustus_model.g13906.t1 Valid prediction for snap_scaffold_8-snap.1947-T1 Valid prediction for GlimmerHMM_glimmerT_20799-T1 Valid prediction for GlimmerHMM_glimmerT_20805-T1 Valid prediction for GeneMark_model.35559_t Couldn't classify 11518, 11767 Sorry, prediction pasa_asmbl_53079.p1 fails validation. (GCT) TA 11518-11767 GT TGG (TGG) AG 12173-12619 GT AGG (ACA) AG 12716-13116 GG AGG -recovered pasa_asmbl_53079.p1, terminal, 12716, 13116 -recovered pasa_asmbl_53079.p1, internal, 12173, 12619 Valid prediction for pasa_asmbl_53052.p1 Valid prediction for GlimmerHMM_glimmerT_20791-T1 Valid prediction for snap_scaffold_8-snap.1918-T1 Valid prediction for GeneMark_model.35543_t Valid prediction for GeneMark_model.35524_t Valid prediction for snap_scaffold_8-snap.1931-T1 Valid prediction for snap_scaffold_8-snap.1913-T1 Valid prediction for GlimmerHMM_glimmerT_20821-T1 Valid prediction for Augustus_model.g13935.t1 Valid prediction for Augustus_model.g13904.t1 Valid prediction for HiQ_model.g13926.t1 Valid prediction for snap_scaffold_8-snap.1929-T1 Valid prediction for CodingQuarry_transcript_59629-T1 Valid prediction for snap_scaffold_8-snap.1923-T1 Valid prediction for pasa_asmbl_53082.p1 Valid prediction for GeneMark_model.35569_t Valid prediction for snap_scaffold_8-snap.1922-T1 Valid prediction for GeneMark_model.35568_t Valid prediction for GeneMark_model.35565_t Valid prediction for CodingQuarry_transcript_59618-T1 Valid prediction for GlimmerHMM_glimmerT_20814-T1 Valid prediction for CodingQuarry_transcript_59627-T1 Valid prediction for snap_scaffold_8-snap.1955-T1 Valid prediction for snap_scaffold_8-snap.1941-T1 Valid prediction for CodingQuarry_transcript_59619-T1 Valid prediction for GeneMark_model.35552_t Valid prediction for GeneMark_model.35541_t Valid prediction for CodingQuarry_transcript_59626-T1 Valid prediction for CodingQuarry_transcript_59609-T1 Valid prediction for GlimmerHMM_glimmerT_20820-T1 Valid prediction for GeneMark_model.35523_t Valid prediction for HiQ_model.g13932.t1 Valid prediction for Augustus_model.g13903.t1 Valid prediction for GeneMark_model.35526_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11856, rend_intergenic: 9843 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 14086, rend_intergenic: 11878 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29104, rend_intergenic: 14817 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54699, rend_intergenic: 30038 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 80915, rend_intergenic: 71928 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 99238, rend_intergenic: 94103 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103959, rend_intergenic: 99468 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113727, rend_intergenic: 110862 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123741, rend_intergenic: 115853 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170924, rend_intergenic: 167106 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 199012, rend_intergenic: 194905 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236124, rend_intergenic: 232196 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 238428 -exon list size: 986 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.8 99.9 -found 49 predictions from path traversal Error with prediction: snap lend_intergenic: 11856, rend_intergenic: 9843 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 14086, rend_intergenic: 11878 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29104, rend_intergenic: 14817 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54699, rend_intergenic: 30038 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 80915, rend_intergenic: 71928 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 99238, rend_intergenic: 94103 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103959, rend_intergenic: 99468 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113727, rend_intergenic: 110862 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123741, rend_intergenic: 115853 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170924, rend_intergenic: 167106 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 199012, rend_intergenic: 194905 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236124, rend_intergenic: 232196 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 35 predictions persist after filtering for low support