-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_8521017-8714245 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for pasa_asmbl_51998.p1 Valid prediction for snap_scaffold_8-snap.1673-T1 Valid prediction for GlimmerHMM_glimmerT_20613-T1 Valid prediction for Augustus_model.g13791.t1 Valid prediction for snap_scaffold_8-snap.1689-T1 Valid prediction for GlimmerHMM_glimmerT_20595-T1 Valid prediction for GeneMark_model.35236_t Valid prediction for GeneMark_model.35202_t Valid prediction for snap_scaffold_8-snap.1680-T1 Valid prediction for GeneMark_model.35229_t Valid prediction for GeneMark_model.35207_t Valid prediction for GeneMark_model.35238_t Valid prediction for snap_scaffold_8-snap.1670-T1 Valid prediction for snap_scaffold_8-snap.1685-T1 Valid prediction for GeneMark_model.35249_t Valid prediction for Augustus_model.g13793.t1 Valid prediction for GeneMark_model.35219_t Valid prediction for HiQ_model.g13783.t1 Couldn't classify 129536, 129697 Couldn't classify 129850, 129893 Sorry, prediction pasa_asmbl_52006.p1 fails validation. (ATG) CC 128727-128876 GT TAG (GCT) AG 129338-129447 GT AAG (GGG) AG 129536-129697 AT CCA (TCT) AC 129850-129893 GT AGG (GGA) AG 130030-130094 GT CTG (GTA) AG 130265-130535 GT AGG (CAG) AG 130654-130773 GT CTG (TGC) AG 131174-131221 GT AGG (AAA) AG 131719-131763 GT AGG (TCT) AG 131995-132110 CC GAC -recovered pasa_asmbl_52006.p1, initial, 128727, 128876 -recovered pasa_asmbl_52006.p1, terminal, 131995, 132110 -recovered pasa_asmbl_52006.p1, internal, 129338, 129447 -recovered pasa_asmbl_52006.p1, internal, 130030, 130094 -recovered pasa_asmbl_52006.p1, internal, 130265, 130535 -recovered pasa_asmbl_52006.p1, internal, 130654, 130773 -recovered pasa_asmbl_52006.p1, internal, 131174, 131221 -recovered pasa_asmbl_52006.p1, internal, 131719, 131763 Valid prediction for Augustus_model.g13788.t1 Valid prediction for GlimmerHMM_glimmerT_20616-T1 Valid prediction for GlimmerHMM_glimmerT_20621-T1 Couldn't classify 189875, 189970 Couldn't classify 192482, 192559 Sorry, prediction pasa_asmbl_52650.p1 fails validation. (GTG) AG 189875-189970 GT TGG (TAT) AG 192250-192378 GT ACG (GAT) AG 192482-192559 TA GGT -recovered pasa_asmbl_52650.p1, internal, 189875, 189970 -recovered pasa_asmbl_52650.p1, internal, 192250, 192378 Valid prediction for GeneMark_model.35227_t Valid prediction for GeneMark_model.35213_t Valid prediction for snap_scaffold_8-snap.1666-T1 Valid prediction for HiQ_model.g13789.t1 Valid prediction for Augustus_model.g13787.t1 Valid prediction for Augustus_model.g13776.t1 Valid prediction for GlimmerHMM_glimmerT_20603-T1 Valid prediction for GlimmerHMM_glimmerT_20620-T1 Valid prediction for CodingQuarry_transcript_59562-T1 Valid prediction for snap_scaffold_8-snap.1675-T1 Valid prediction for GeneMark_model.35210_t Valid prediction for GlimmerHMM_glimmerT_20605-T1 Valid prediction for Augustus_model.g13800.t1 Valid prediction for GlimmerHMM_glimmerT_20598-T1 Valid prediction for snap_scaffold_8-snap.1667-T1 Valid prediction for Augustus_model.g13774.t1 Couldn't classify 117481, 117615 Couldn't classify 119193, 119289 Sorry, prediction pasa_asmbl_52002.p1 fails validation. (GAC) GG 117481-117615 GT TGG (TTT) AG 117943-117996 GT AGG (GTC) AG 118164-118308 GT ATG (TGA) AG 118924-119062 GT AGG (TGC) AG 119193-119289 AG CCA add_exon() Sorry, pasa_asmbl_52002.p1 118924-119062-terminal-3 is invalid. -recovered pasa_asmbl_52002.p1, terminal, 118924, 119062 -recovered pasa_asmbl_52002.p1, internal, 117943, 117996 -recovered pasa_asmbl_52002.p1, internal, 118164, 118308 -recovered pasa_asmbl_52002.p1, internal, 118924, 119062 Couldn't classify 129536, 129697 Couldn't classify 129850, 129893 Sorry, prediction CodingQuarry_transcript_59565-T1 fails validation. (ATG) CC 128727-128876 GT TAG (GCT) AG 129338-129447 GT AAG (GGG) AG 129536-129697 AT CCA (TCT) AC 129850-129893 GT AGG (GGA) AG 130030-130094 GT CTG (GTA) AG 130265-130535 GT AGG (CAG) AG 130654-130773 GT CTG (TGC) AG 131174-131221 GT AGG (AAA) AG 131719-131763 GT AGG (TCT) AG 131995-132110 CC GAC -recovered CodingQuarry_transcript_59565-T1, initial, 128727, 128876 -recovered CodingQuarry_transcript_59565-T1, terminal, 131995, 132110 -recovered CodingQuarry_transcript_59565-T1, internal, 129338, 129447 -recovered CodingQuarry_transcript_59565-T1, internal, 130030, 130094 -recovered CodingQuarry_transcript_59565-T1, internal, 130265, 130535 -recovered CodingQuarry_transcript_59565-T1, internal, 130654, 130773 -recovered CodingQuarry_transcript_59565-T1, internal, 131174, 131221 -recovered CodingQuarry_transcript_59565-T1, internal, 131719, 131763 Valid prediction for HiQ_model.g13781.t1 Valid prediction for Augustus_model.g13796.t1 Valid prediction for GlimmerHMM_glimmerT_20623-T1 Valid prediction for GeneMark_model.35241_t Valid prediction for GlimmerHMM_glimmerT_20618-T1 Valid prediction for Augustus_model.g13798.t1 Valid prediction for snap_scaffold_8-snap.1701-T1 Valid prediction for GlimmerHMM_glimmerT_20617-T1 Couldn't classify 77581, 77646 Sorry, prediction pasa_asmbl_51999.p1 fails validation. (GCT) TG 77581-77646 GT AGG (GAA) AG 77839-77971 GT CGG (TCA) AG 78056-78189 GC AGG (GTT) AG 78282-78353 GT AGG (AGG) AG 78513-78644 GT TGG (CAT) AG 78752-79048 GT AGG (AAT) AG 79139-79236 GT AAG (GAC) AG 79312-79456 GT AGG (TAC) AG 79609-79878 TG AAT -recovered pasa_asmbl_51999.p1, terminal, 79609, 79878 -recovered pasa_asmbl_51999.p1, internal, 77839, 77971 -recovered pasa_asmbl_51999.p1, internal, 78056, 78189 -recovered pasa_asmbl_51999.p1, internal, 78282, 78353 -recovered pasa_asmbl_51999.p1, internal, 78513, 78644 -recovered pasa_asmbl_51999.p1, internal, 78752, 79048 -recovered pasa_asmbl_51999.p1, internal, 79139, 79236 -recovered pasa_asmbl_51999.p1, internal, 79312, 79456 Valid prediction for GlimmerHMM_glimmerT_20625-T1 Valid prediction for snap_scaffold_8-snap.1693-T1 Valid prediction for GlimmerHMM_glimmerT_20622-T1 Valid prediction for GeneMark_model.35231_t Valid prediction for snap_scaffold_8-snap.1664-T1 Valid prediction for GlimmerHMM_glimmerT_20611-T1 Valid prediction for snap_scaffold_8-snap.1660-T1 Valid prediction for GeneMark_model.35204_t Valid prediction for GeneMark_model.35245_t Valid prediction for snap_scaffold_8-snap.1686-T1 Couldn't classify 119427, 119483 Sorry, prediction pasa_asmbl_52003.p1 fails validation. (CCC) GC 119427-119483 GT AGG (TGC) AG 119684-119798 GT AGG (GCG) AG 119919-120066 GT AGG (GGC) AG 120177-120376 GT AGG (GTC) AG 120469-120520 GT AGG (CTG) AG 120629-120740 GG AGG -recovered pasa_asmbl_52003.p1, terminal, 120629, 120740 -recovered pasa_asmbl_52003.p1, internal, 119684, 119798 -recovered pasa_asmbl_52003.p1, internal, 119919, 120066 -recovered pasa_asmbl_52003.p1, internal, 120177, 120376 -recovered pasa_asmbl_52003.p1, internal, 120469, 120520 Valid prediction for GeneMark_model.35221_t Valid prediction for snap_scaffold_8-snap.1694-T1 Valid prediction for Augustus_model.g13797.t1 Valid prediction for GlimmerHMM_glimmerT_20628-T1 Valid prediction for snap_scaffold_8-snap.1684-T1 Valid prediction for GlimmerHMM_glimmerT_20631-T1 Valid prediction for pasa_asmbl_52000.p1 Valid prediction for snap_scaffold_8-snap.1690-T1 Valid prediction for snap_scaffold_8-snap.1696-T1 Valid prediction for GlimmerHMM_glimmerT_20627-T1 Valid prediction for GeneMark_model.35215_t Valid prediction for GeneMark_model.35242_t Valid prediction for GeneMark_model.35225_t Couldn't classify 129536, 129697 Couldn't classify 129850, 129893 Sorry, prediction CodingQuarry_transcript_59564-T1 fails validation. (ATG) CC 128727-128876 GT TAG (GCT) AG 129338-129447 GT AAG (GGG) AG 129536-129697 AT CCA (TCT) AC 129850-129893 GT AGG (GGA) AG 130030-130094 GT CTG (GTA) AG 130265-130535 GT AGG (AGA) AG 130657-130773 GT CTG (TGC) AG 131174-131221 GT AGG (AAA) AG 131719-131763 GT AGG (TCT) AG 131995-132110 CC GAC -recovered CodingQuarry_transcript_59564-T1, initial, 128727, 128876 -recovered CodingQuarry_transcript_59564-T1, terminal, 131995, 132110 -recovered CodingQuarry_transcript_59564-T1, internal, 129338, 129447 -recovered CodingQuarry_transcript_59564-T1, internal, 130030, 130094 -recovered CodingQuarry_transcript_59564-T1, internal, 130265, 130535 -recovered CodingQuarry_transcript_59564-T1, internal, 130657, 130773 -recovered CodingQuarry_transcript_59564-T1, internal, 131174, 131221 -recovered CodingQuarry_transcript_59564-T1, internal, 131719, 131763 Valid prediction for snap_scaffold_8-snap.1699-T1 Valid prediction for GeneMark_model.35247_t Valid prediction for snap_scaffold_8-snap.1662-T1 Valid prediction for GlimmerHMM_glimmerT_20606-T1 Valid prediction for GeneMark_model.35232_t Valid prediction for CodingQuarry_transcript_59559-T1 Valid prediction for snap_scaffold_8-snap.1698-T1 Valid prediction for snap_scaffold_8-snap.1688-T1 Valid prediction for GlimmerHMM_glimmerT_20610-T1 Valid prediction for GeneMark_model.35234_t Valid prediction for GlimmerHMM_glimmerT_20596-T1 Valid prediction for GeneMark_model.35240_t Valid prediction for GeneMark_model.35228_t Valid prediction for snap_scaffold_8-snap.1678-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 95576, 95911 Sorry, prediction pasa_asmbl_52962.p1 fails validation. (AGG) GT 95576-95911 GT CGG (GGT) AG 96738-96862 GT AGG (TAT) AG 97568-97664 GT CTG (ATG) AG 97854-97935 GT CGG (AGT) AG 99333-99463 GT CGG (GAG) AG 100301-100480 GG GAG -recovered pasa_asmbl_52962.p1, initial, 97854, 97935 -recovered pasa_asmbl_52962.p1, terminal, 100301, 100480 -recovered pasa_asmbl_52962.p1, internal, 96738, 96862 -recovered pasa_asmbl_52962.p1, internal, 97568, 97664 -recovered pasa_asmbl_52962.p1, internal, 97854, 97935 -recovered pasa_asmbl_52962.p1, internal, 99333, 99463 Valid prediction for snap_scaffold_8-snap.1681-T1 Valid prediction for GlimmerHMM_glimmerT_20594-T1 Valid prediction for snap_scaffold_8-snap.1679-T1 Valid prediction for GlimmerHMM_glimmerT_20624-T1 Valid prediction for CodingQuarry_transcript_59563-T1 Valid prediction for GeneMark_model.35217_t Valid prediction for Augustus_model.g13778.t1 Valid prediction for GlimmerHMM_glimmerT_20608-T1 Valid prediction for snap_scaffold_8-snap.1692-T1 Valid prediction for Augustus_model.g13784.t1 Couldn't classify 102655, 102832 Couldn't classify 104607, 104711 Sorry, prediction pasa_asmbl_52961.p1 fails validation. (GTA) CT 102655-102832 GT AAG (ATC) AG 103018-103113 GT AGG (ACT) AG 103328-103455 GT TGG (CTG) AG 103708-103794 GT AGG (AAA) AG 104337-104477 GT GGG (GTT) AG 104607-104711 GA CTG add_exon() Sorry, pasa_asmbl_52961.p1 103018-103113-terminal-1 is invalid. -recovered pasa_asmbl_52961.p1, terminal, 103018, 103113 -recovered pasa_asmbl_52961.p1, internal, 103018, 103113 -recovered pasa_asmbl_52961.p1, internal, 103328, 103455 -recovered pasa_asmbl_52961.p1, internal, 103708, 103794 -recovered pasa_asmbl_52961.p1, internal, 104337, 104477 Valid prediction for HiQ_model.g13777.t1 Valid prediction for GeneMark_model.35246_t Valid prediction for GeneMark_model.35226_t Valid prediction for GeneMark_model.35223_t Couldn't classify 174958, 175248 Sorry, prediction pasa_asmbl_52947.p1 fails validation. (GTA) GG 174958-175248 GT AGG (TTG) AG 175440-175641 GT AGG (CTG) AG 176063-176233 GT AGG (AAT) AG 176412-176659 CG GAC -recovered pasa_asmbl_52947.p1, terminal, 176412, 176659 -recovered pasa_asmbl_52947.p1, internal, 175440, 175641 -recovered pasa_asmbl_52947.p1, internal, 176063, 176233 Couldn't classify 120520, 120601 Sorry, prediction pasa_asmbl_52956.p1 fails validation. (ATG) CT 116457-116497 GT GGG (GCG) AG 116765-116900 GT CTG (AGT) AG 117055-117140 GT AGG (TGA) AG 117311-117391 GT AGG (AGA) AG 117486-117523 GT CGG (CGG) AG 117658-117746 GT GGG (AAA) AG 118023-118139 GT GGG (TTC) AG 118238-118315 GT CTG (CCC) AG 118410-118566 GT GGG (GGT) AG 118797-118876 GT AGG (CTG) AG 118971-119094 GT GGG (ACC) AG 119340-119458 GT AGG (ATG) AG 119567-119731 GT AGG (ATT) AG 119994-120089 GT TGG (ACC) AG 120191-120417 GT AGG (GTC) AG 120520-120601 CT GGC -recovered pasa_asmbl_52956.p1, initial, 116457, 116497 -recovered pasa_asmbl_52956.p1, initial, 119567, 119731 -recovered pasa_asmbl_52956.p1, internal, 116765, 116900 -recovered pasa_asmbl_52956.p1, internal, 117055, 117140 -recovered pasa_asmbl_52956.p1, internal, 117311, 117391 -recovered pasa_asmbl_52956.p1, internal, 117486, 117523 -recovered pasa_asmbl_52956.p1, internal, 117658, 117746 -recovered pasa_asmbl_52956.p1, internal, 118023, 118139 -recovered pasa_asmbl_52956.p1, internal, 118238, 118315 -recovered pasa_asmbl_52956.p1, internal, 118410, 118566 -recovered pasa_asmbl_52956.p1, internal, 118797, 118876 -recovered pasa_asmbl_52956.p1, internal, 118971, 119094 -recovered pasa_asmbl_52956.p1, internal, 119340, 119458 -recovered pasa_asmbl_52956.p1, internal, 119567, 119731 -recovered pasa_asmbl_52956.p1, internal, 119994, 120089 -recovered pasa_asmbl_52956.p1, internal, 120191, 120417 Valid prediction for pasa_asmbl_52963.p1 Valid prediction for GeneMark_model.35214_t Valid prediction for GeneMark_model.35243_t Valid prediction for snap_scaffold_8-snap.1663-T1 Valid prediction for GlimmerHMM_glimmerT_20604-T1 Valid prediction for GeneMark_model.35220_t Valid prediction for GlimmerHMM_glimmerT_20601-T1 Valid prediction for snap_scaffold_8-snap.1695-T1 Valid prediction for GeneMark_model.35201_t Valid prediction for GlimmerHMM_glimmerT_20619-T1 Valid prediction for GeneMark_model.35233_t Valid prediction for Augustus_model.g13786.t1 Valid prediction for GlimmerHMM_glimmerT_20602-T1 Valid prediction for snap_scaffold_8-snap.1682-T1 Couldn't classify 133270, 133590 Sorry, prediction pasa_asmbl_53576.p1 fails validation. (AAG) CG 133270-133590 GT AGG Couldn't classify 105742, 106220 Sorry, prediction pasa_asmbl_52958.p1 fails validation. (GAT) CA 105742-106220 GT GAG (GGT) AG 106358-106486 GT TGG (GAA) AG 106801-106883 GT CGG (GGT) AG 106988-107034 GT GAG (ATG) AG 107310-107468 AA GAA -recovered pasa_asmbl_52958.p1, terminal, 107310, 107468 -recovered pasa_asmbl_52958.p1, internal, 106358, 106486 -recovered pasa_asmbl_52958.p1, internal, 106801, 106883 -recovered pasa_asmbl_52958.p1, internal, 106988, 107034 Valid prediction for GlimmerHMM_glimmerT_20614-T1 Valid prediction for snap_scaffold_8-snap.1669-T1 Valid prediction for GeneMark_model.35212_t Valid prediction for snap_scaffold_8-snap.1672-T1 Valid prediction for snap_scaffold_8-snap.1700-T1 Valid prediction for snap_scaffold_8-snap.1661-T1 Valid prediction for Augustus_model.g13785.t1 Valid prediction for Augustus_model.g13795.t1 Valid prediction for snap_scaffold_8-snap.1676-T1 Valid prediction for CodingQuarry_transcript_59560-T1 Valid prediction for GeneMark_model.35216_t Valid prediction for GeneMark_model.35205_t Valid prediction for GeneMark_model.35200_t Valid prediction for Augustus_model.g13794.t1 Valid prediction for GeneMark_model.35208_t Valid prediction for HiQ_model.g13779.t1 Valid prediction for GlimmerHMM_glimmerT_20599-T1 Valid prediction for Augustus_model.g13799.t1 Valid prediction for HiQ_model.g13790.t1 Valid prediction for GlimmerHMM_glimmerT_20630-T1 Valid prediction for GeneMark_model.35224_t Valid prediction for pasa_asmbl_52957.p1 Valid prediction for snap_scaffold_8-snap.1702-T1 Valid prediction for GeneMark_model.35248_t Valid prediction for GeneMark_model.35209_t Valid prediction for HiQ_model.g13775.t1 Valid prediction for CodingQuarry_transcript_59561-T1 Valid prediction for snap_scaffold_8-snap.1687-T1 Valid prediction for GeneMark_model.35244_t Valid prediction for GeneMark_model.35250_t Valid prediction for Augustus_model.g13780.t1 Valid prediction for Augustus_model.g13792.t1 Valid prediction for GlimmerHMM_glimmerT_20609-T1 Valid prediction for GlimmerHMM_glimmerT_20629-T1 Valid prediction for HiQ_model.g13782.t1 Valid prediction for GeneMark_model.35239_t Valid prediction for snap_scaffold_8-snap.1674-T1 Valid prediction for GlimmerHMM_glimmerT_20597-T1 Valid prediction for pasa_asmbl_52950.p1 Valid prediction for GeneMark_model.35206_t Valid prediction for snap_scaffold_8-snap.1665-T1 Valid prediction for snap_scaffold_8-snap.1668-T1 Valid prediction for snap_scaffold_8-snap.1697-T1 Valid prediction for GlimmerHMM_glimmerT_20612-T1 Valid prediction for snap_scaffold_8-snap.1691-T1 Valid prediction for snap_scaffold_8-snap.1671-T1 Valid prediction for GlimmerHMM_glimmerT_20600-T1 Valid prediction for snap_scaffold_8-snap.1683-T1 Valid prediction for GeneMark_model.35230_t Valid prediction for GeneMark_model.35211_t Couldn't classify 122432, 122544 Sorry, prediction pasa_asmbl_52954.p1 fails validation. (GTG) AG 122432-122544 GT CTG (CCT) AG 122792-122942 GT ATG (CCC) AG 123417-123498 GT TGG (GTC) AG 123775-123895 GC AGG (GAT) AG 123987-124129 GT TGG (AGT) AG 124284-124519 GC GAG -recovered pasa_asmbl_52954.p1, terminal, 124284, 124519 -recovered pasa_asmbl_52954.p1, internal, 122432, 122544 -recovered pasa_asmbl_52954.p1, internal, 122792, 122942 -recovered pasa_asmbl_52954.p1, internal, 123417, 123498 -recovered pasa_asmbl_52954.p1, internal, 123775, 123895 -recovered pasa_asmbl_52954.p1, internal, 123987, 124129 -recovered pasa_asmbl_52954.p1, internal, 124284, 124519 Valid prediction for GlimmerHMM_glimmerT_20607-T1 Valid prediction for GlimmerHMM_glimmerT_20615-T1 Valid prediction for snap_scaffold_8-snap.1677-T1 Valid prediction for GlimmerHMM_glimmerT_20626-T1 Valid prediction for GeneMark_model.35218_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 30399, rend_intergenic: 23696 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 51858, rend_intergenic: 38118 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 95119, rend_intergenic: 92750 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 98097, rend_intergenic: 95225 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170650, rend_intergenic: 169297 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 177489, rend_intergenic: 171232 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184956, rend_intergenic: 180929 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187583, rend_intergenic: 185089 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 193229 -exon list size: 696 building trellis 0.1 0.3 0.4 0.6 0.7 0.9 1.0 1.1 1.3 1.4 1.6 1.7 1.9 2.0 2.1 2.3 2.4 2.6 2.7 2.9 3.0 3.2 3.3 3.4 3.6 3.7 3.9 4.0 4.2 4.3 4.4 4.6 4.7 4.9 5.0 5.2 5.3 5.4 5.6 5.7 5.9 6.0 6.2 6.3 6.4 6.6 6.7 6.9 7.0 7.2 7.3 7.4 7.6 7.7 7.9 8.0 8.2 8.3 8.5 8.6 8.7 8.9 9.0 9.2 9.3 9.5 9.6 9.7 9.9 10.0 10.2 10.3 10.5 10.6 10.7 10.9 11.0 11.2 11.3 11.5 11.6 11.7 11.9 12.0 12.2 12.3 12.5 12.6 12.8 12.9 13.0 13.2 13.3 13.5 13.6 13.8 13.9 14.0 14.2 14.3 14.5 14.6 14.8 14.9 15.0 15.2 15.3 15.5 15.6 15.8 15.9 16.0 16.2 16.3 16.5 16.6 16.8 16.9 17.0 17.2 17.3 17.5 17.6 17.8 17.9 18.1 18.2 18.3 18.5 18.6 18.8 18.9 19.1 19.2 19.3 19.5 19.6 19.8 19.9 20.1 20.2 20.3 20.5 20.6 20.8 20.9 21.1 21.2 21.3 21.5 21.6 21.8 21.9 22.1 22.2 22.3 22.5 22.6 22.8 22.9 23.1 23.2 23.4 23.5 23.6 23.8 23.9 24.1 24.2 24.4 24.5 24.6 24.8 24.9 25.1 25.2 25.4 25.5 25.6 25.8 25.9 26.1 26.2 26.4 26.5 26.6 26.8 26.9 27.1 27.2 27.4 27.5 27.7 27.8 27.9 28.1 28.2 28.4 28.5 28.7 28.8 28.9 29.1 29.2 29.4 29.5 29.7 29.8 29.9 30.1 30.2 30.4 30.5 30.7 30.8 30.9 31.1 31.2 31.4 31.5 31.7 31.8 31.9 32.1 32.2 32.4 32.5 32.7 32.8 33.0 33.1 33.2 33.4 33.5 33.7 33.8 34.0 34.1 34.2 34.4 34.5 34.7 34.8 35.0 35.1 35.2 35.4 35.5 35.7 35.8 36.0 36.1 36.2 36.4 36.5 36.7 36.8 37.0 37.1 37.2 37.4 37.5 37.7 37.8 38.0 38.1 38.3 38.4 38.5 38.7 38.8 39.0 39.1 39.3 39.4 39.5 39.7 39.8 40.0 40.1 40.3 40.4 40.5 40.7 40.8 41.0 41.1 41.3 41.4 41.5 41.7 41.8 42.0 42.1 42.3 42.4 42.6 42.7 42.8 43.0 43.1 43.3 43.4 43.6 43.7 43.8 44.0 44.1 44.3 44.4 44.6 44.7 44.8 45.0 45.1 45.3 45.4 45.6 45.7 45.8 46.0 46.1 46.3 46.4 46.6 46.7 46.8 47.0 47.1 47.3 47.4 47.6 47.7 47.9 48.0 48.1 48.3 48.4 48.6 48.7 48.9 49.0 49.1 49.3 49.4 49.6 49.7 49.9 50.0 50.1 50.3 50.4 50.6 50.7 50.9 51.0 51.1 51.3 51.4 51.6 51.7 51.9 52.0 52.1 52.3 52.4 52.6 52.7 52.9 53.0 53.2 53.3 53.4 53.6 53.7 53.9 54.0 54.2 54.3 54.4 54.6 54.7 54.9 55.0 55.2 55.3 55.4 55.6 55.7 55.9 56.0 56.2 56.3 56.4 56.6 56.7 56.9 57.0 57.2 57.3 57.4 57.6 57.7 57.9 58.0 58.2 58.3 58.5 58.6 58.7 58.9 59.0 59.2 59.3 59.5 59.6 59.7 59.9 60.0 60.2 60.3 60.5 60.6 60.7 60.9 61.0 61.2 61.3 61.5 61.6 61.7 61.9 62.0 62.2 62.3 62.5 62.6 62.8 62.9 63.0 63.2 63.3 63.5 63.6 63.8 63.9 64.0 64.2 64.3 64.5 64.6 64.8 64.9 65.0 65.2 65.3 65.5 65.6 65.8 65.9 66.0 66.2 66.3 66.5 66.6 66.8 66.9 67.0 67.2 67.3 67.5 67.6 67.8 67.9 68.1 68.2 68.3 68.5 68.6 68.8 68.9 69.1 69.2 69.3 69.5 69.6 69.8 69.9 70.1 70.2 70.3 70.5 70.6 70.8 70.9 71.1 71.2 71.3 71.5 71.6 71.8 71.9 72.1 72.2 72.3 72.5 72.6 72.8 72.9 73.1 73.2 73.4 73.5 73.6 73.8 73.9 74.1 74.2 74.4 74.5 74.6 74.8 74.9 75.1 75.2 75.4 75.5 75.6 75.8 75.9 76.1 76.2 76.4 76.5 76.6 76.8 76.9 77.1 77.2 77.4 77.5 77.7 77.8 77.9 78.1 78.2 78.4 78.5 78.7 78.8 78.9 79.1 79.2 79.4 79.5 79.7 79.8 79.9 80.1 80.2 80.4 80.5 80.7 80.8 80.9 81.1 81.2 81.4 81.5 81.7 81.8 81.9 82.1 82.2 82.4 82.5 82.7 82.8 83.0 83.1 83.2 83.4 83.5 83.7 83.8 84.0 84.1 84.2 84.4 84.5 84.7 84.8 85.0 85.1 85.2 85.4 85.5 85.7 85.8 86.0 86.1 86.2 86.4 86.5 86.7 86.8 87.0 87.1 87.2 87.4 87.5 87.7 87.8 88.0 88.1 88.3 88.4 88.5 88.7 88.8 89.0 89.1 89.3 89.4 89.5 89.7 89.8 90.0 90.1 90.3 90.4 90.5 90.7 90.8 91.0 91.1 91.3 91.4 91.5 91.7 91.8 92.0 92.1 92.3 92.4 92.6 92.7 92.8 93.0 93.1 93.3 93.4 93.6 93.7 93.8 94.0 94.1 94.3 94.4 94.6 94.7 94.8 95.0 95.1 95.3 95.4 95.6 95.7 95.8 96.0 96.1 96.3 96.4 96.6 96.7 96.8 97.0 97.1 97.3 97.4 97.6 97.7 97.9 98.0 98.1 98.3 98.4 98.6 98.7 98.9 99.0 99.1 99.3 99.4 99.6 99.7 99.9 -found 38 predictions from path traversal Error with prediction: snap lend_intergenic: 30399, rend_intergenic: 23696 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 51858, rend_intergenic: 38118 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 95119, rend_intergenic: 92750 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 98097, rend_intergenic: 95225 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170650, rend_intergenic: 169297 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 177489, rend_intergenic: 171232 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184956, rend_intergenic: 180929 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187583, rend_intergenic: 185089 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 29 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 11730 -exon list size: 14 building trellis 6.2 12.5 18.8 25.0 31.2 37.5 43.8 50.0 56.2 62.5 68.8 75.0 81.2 87.5 93.8 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 11440 -exon list size: 13 building trellis 6.7 13.3 20.0 26.7 33.3 40.0 46.7 53.3 60.0 66.7 73.3 80.0 86.7 93.3 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support