-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_8418861-8522834

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_20593-T1
Valid prediction for GeneMark_model.35188_t
Valid prediction for snap_scaffold_8-snap.1656-T1
Valid prediction for GlimmerHMM_glimmerT_20587-T1
Valid prediction for snap_scaffold_8-snap.1655-T1
Valid prediction for GeneMark_model.35186_t
Valid prediction for GeneMark_model.35197_t
Valid prediction for GlimmerHMM_glimmerT_20584-T1
Valid prediction for GlimmerHMM_glimmerT_20589-T1
Valid prediction for GeneMark_model.35196_t
Valid prediction for snap_scaffold_8-snap.1658-T1
Valid prediction for GeneMark_model.35198_t
Valid prediction for GeneMark_model.35190_t
Valid prediction for GlimmerHMM_glimmerT_20586-T1
Valid prediction for GeneMark_model.35199_t
Valid prediction for snap_scaffold_8-snap.1659-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.35192_t
Valid prediction for snap_scaffold_8-snap.1652-T1
Valid prediction for GlimmerHMM_glimmerT_20592-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.1649-T1
Valid prediction for Augustus_model.g13770.t1
Valid prediction for Augustus_model.g13771.t1
Valid prediction for GeneMark_model.35189_t
Valid prediction for GeneMark_model.35193_t
Valid prediction for GeneMark_model.35191_t
Valid prediction for snap_scaffold_8-snap.1650-T1
Valid prediction for snap_scaffold_8-snap.1651-T1
Valid prediction for GlimmerHMM_glimmerT_20585-T1
Valid prediction for Augustus_model.g13768.t1
Valid prediction for snap_scaffold_8-snap.1657-T1
Valid prediction for snap_scaffold_8-snap.1647-T1
Valid prediction for GeneMark_model.35185_t
Valid prediction for Augustus_model.g13767.t1
Valid prediction for snap_scaffold_8-snap.1654-T1
Valid prediction for GlimmerHMM_glimmerT_20591-T1
Valid prediction for snap_scaffold_8-snap.1653-T1
Valid prediction for GeneMark_model.35184_t
Valid prediction for GlimmerHMM_glimmerT_20590-T1
Valid prediction for GlimmerHMM_glimmerT_20588-T1
Valid prediction for Augustus_model.g13772.t1
Valid prediction for GeneMark_model.35195_t
Valid prediction for Augustus_model.g13773.t1
Valid prediction for GeneMark_model.35194_t
Valid prediction for Augustus_model.g13769.t1
Valid prediction for GeneMark_model.35183_t
Valid prediction for snap_scaffold_8-snap.1648-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 103974
-exon list size: 135


building trellis

0.7    
1.5    
2.2    
2.9    
3.6    
4.4    
5.1    
5.8    
6.6    
7.3    
8.0    
8.8    
9.5    
10.2    
10.9    
11.7    
12.4    
13.1    
13.9    
14.6    
15.3    
16.1    
16.8    
17.5    
18.2    
19.0    
19.7    
20.4    
21.2    
21.9    
22.6    
23.4    
24.1    
24.8    
25.5    
26.3    
27.0    
27.7    
28.5    
29.2    
29.9    
30.7    
31.4    
32.1    
32.8    
33.6    
34.3    
35.0    
35.8    
36.5    
37.2    
38.0    
38.7    
39.4    
40.1    
40.9    
41.6    
42.3    
43.1    
43.8    
44.5    
45.3    
46.0    
46.7    
47.4    
48.2    
48.9    
49.6    
50.4    
51.1    
51.8    
52.6    
53.3    
54.0    
54.7    
55.5    
56.2    
56.9    
57.7    
58.4    
59.1    
59.9    
60.6    
61.3    
62.0    
62.8    
63.5    
64.2    
65.0    
65.7    
66.4    
67.2    
67.9    
68.6    
69.3    
70.1    
70.8    
71.5    
72.3    
73.0    
73.7    
74.5    
75.2    
75.9    
76.6    
77.4    
78.1    
78.8    
79.6    
80.3    
81.0    
81.8    
82.5    
83.2    
83.9    
84.7    
85.4    
86.1    
86.9    
87.6    
88.3    
89.1    
89.8    
90.5    
91.2    
92.0    
92.7    
93.4    
94.2    
94.9    
95.6    
96.4    
97.1    
97.8    
98.5    
99.3    
-found 12 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support