-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_8128669-8423335

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_20574-T1
Valid prediction for GeneMark_model.35145_t
Valid prediction for CodingQuarry_transcript_59555-T1
Valid prediction for snap_scaffold_8-snap.1595-T1
Valid prediction for Augustus_model.g13745.t1
Valid prediction for GlimmerHMM_glimmerT_20568-T1
Valid prediction for GlimmerHMM_glimmerT_20565-T1
Valid prediction for GeneMark_model.35149_t
Valid prediction for snap_scaffold_8-snap.1619-T1
Valid prediction for pasa_asmbl_51991.p1
Valid prediction for Augustus_model.g13762.t1
Couldn't classify 236736, 236778
Couldn't classify 242300, 242439
Sorry, prediction pasa_asmbl_52668.p1 fails validation.
(AAG)	 CC	236736-236778	GT	TGG
(ATA)	 AG	237928-237970	GT	AGG
(TAT)	 AG	238069-238180	GT	GGG
(GAA)	 AG	240437-240602	GT	AAG
(ACT)	 AG	241751-241818	GT	AGG
(TTC)	 AG	242025-242091	GT	ACG
(CTA)	 AG	242300-242439	AA	GCA
-recovered pasa_asmbl_52668.p1, internal, 237928, 237970
-recovered pasa_asmbl_52668.p1, internal, 238069, 238180
-recovered pasa_asmbl_52668.p1, internal, 240437, 240602
-recovered pasa_asmbl_52668.p1, internal, 241751, 241818
-recovered pasa_asmbl_52668.p1, internal, 242025, 242091
Valid prediction for GeneMark_model.35171_t
Valid prediction for snap_scaffold_8-snap.1612-T1
Valid prediction for GlimmerHMM_glimmerT_20555-T1
Valid prediction for GlimmerHMM_glimmerT_20549-T1
Valid prediction for snap_scaffold_8-snap.1615-T1
Valid prediction for Augustus_model.g13753.t1
Valid prediction for GlimmerHMM_glimmerT_20546-T1
Valid prediction for snap_scaffold_8-snap.1621-T1
Valid prediction for GeneMark_model.35121_t
Valid prediction for GlimmerHMM_glimmerT_20544-T1
Valid prediction for snap_scaffold_8-snap.1623-T1
Valid prediction for Augustus_model.g13765.t1
Valid prediction for GeneMark_model.35172_t
Valid prediction for GeneMark_model.35126_t
Valid prediction for Augustus_model.g13756.t1
Valid prediction for snap_scaffold_8-snap.1624-T1
Valid prediction for Augustus_model.g13742.t1
Valid prediction for GeneMark_model.35139_t
Valid prediction for snap_scaffold_8-snap.1598-T1
Valid prediction for snap_scaffold_8-snap.1604-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_20583-T1
Valid prediction for GeneMark_model.35182_t
Valid prediction for GeneMark_model.35127_t
Valid prediction for GeneMark_model.35151_t
Valid prediction for snap_scaffold_8-snap.1594-T1
Valid prediction for GlimmerHMM_glimmerT_20563-T1
Valid prediction for GeneMark_model.35153_t
Valid prediction for GeneMark_model.35155_t
Valid prediction for GeneMark_model.35176_t
Valid prediction for GlimmerHMM_glimmerT_20570-T1
Valid prediction for GeneMark_model.35174_t
Valid prediction for GeneMark_model.35162_t
Valid prediction for Augustus_model.g13763.t1
Valid prediction for snap_scaffold_8-snap.1601-T1
Valid prediction for Augustus_model.g13741.t1
Valid prediction for GlimmerHMM_glimmerT_20553-T1
Couldn't classify 244445, 244523
Sorry, prediction pasa_asmbl_51996.p1 fails validation.
(CCA)	 TC	244445-244523	GT	CGG
(AGG)	 AG	245523-245774	GT	GGG
(ATG)	 AG	246427-246503	GT	TGG
(GAT)	 AG	247439-247620	GT	ATG
(GGA)	 AG	248268-248350	GT	AGG
(ACA)	 AG	248479-248664	GT	AGG
(TGG)	 AG	249052-249225	GT	GAG
(ACG)	 AG	249336-249406	GT	AGG
(GGA)	 AG	250018-250062	GT	AGG
(CAG)	 AG	250160-250210	GT	AGG
(GCG)	 AG	250336-250794	GT	AGG
(AGG)	 AG	251351-251654	GT	AGG
(ATG)	 AG	251831-251886	CA	GAC
-recovered pasa_asmbl_51996.p1, initial, 246427, 246503
-recovered pasa_asmbl_51996.p1, terminal, 251831, 251886
-recovered pasa_asmbl_51996.p1, internal, 245523, 245774
-recovered pasa_asmbl_51996.p1, internal, 246427, 246503
-recovered pasa_asmbl_51996.p1, internal, 247439, 247620
-recovered pasa_asmbl_51996.p1, internal, 248268, 248350
-recovered pasa_asmbl_51996.p1, internal, 248479, 248664
-recovered pasa_asmbl_51996.p1, internal, 249052, 249225
-recovered pasa_asmbl_51996.p1, internal, 249336, 249406
-recovered pasa_asmbl_51996.p1, internal, 250018, 250062
-recovered pasa_asmbl_51996.p1, internal, 250160, 250210
-recovered pasa_asmbl_51996.p1, internal, 250336, 250794
-recovered pasa_asmbl_51996.p1, internal, 251351, 251654
Valid prediction for GeneMark_model.35178_t
Valid prediction for snap_scaffold_8-snap.1607-T1
Valid prediction for snap_scaffold_8-snap.1641-T1
Valid prediction for GeneMark_model.35180_t
Valid prediction for snap_scaffold_8-snap.1597-T1
Valid prediction for GeneMark_model.35136_t
Valid prediction for GeneMark_model.35179_t
Valid prediction for GeneMark_model.35159_t
Valid prediction for GeneMark_model.35131_t
Valid prediction for snap_scaffold_8-snap.1602-T1
Valid prediction for snap_scaffold_8-snap.1638-T1
Valid prediction for snap_scaffold_8-snap.1610-T1
Valid prediction for GlimmerHMM_glimmerT_20577-T1
Valid prediction for snap_scaffold_8-snap.1643-T1
Valid prediction for GeneMark_model.35143_t
Valid prediction for snap_scaffold_8-snap.1627-T1
Valid prediction for GlimmerHMM_glimmerT_20579-T1
Valid prediction for GeneMark_model.35134_t
Valid prediction for GeneMark_model.35158_t
Valid prediction for snap_scaffold_8-snap.1640-T1
Valid prediction for snap_scaffold_8-snap.1600-T1
Valid prediction for GlimmerHMM_glimmerT_20581-T1
Valid prediction for GeneMark_model.35124_t
Valid prediction for GeneMark_model.35160_t
Valid prediction for GeneMark_model.35165_t
Valid prediction for snap_scaffold_8-snap.1645-T1
Valid prediction for snap_scaffold_8-snap.1613-T1
Valid prediction for snap_scaffold_8-snap.1636-T1
Valid prediction for GeneMark_model.35141_t
Valid prediction for snap_scaffold_8-snap.1633-T1
Valid prediction for GlimmerHMM_glimmerT_20566-T1
Valid prediction for GeneMark_model.35129_t
Valid prediction for GlimmerHMM_glimmerT_20575-T1
Valid prediction for GlimmerHMM_glimmerT_20580-T1
Valid prediction for snap_scaffold_8-snap.1603-T1
Valid prediction for snap_scaffold_8-snap.1628-T1
Valid prediction for Augustus_model.g13766.t1
Valid prediction for snap_scaffold_8-snap.1609-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g13750.t1
Valid prediction for Augustus_model.g13758.t1
Valid prediction for pasa_asmbl_52941.p1
Valid prediction for GlimmerHMM_glimmerT_20552-T1
Valid prediction for GlimmerHMM_glimmerT_20576-T1
Valid prediction for snap_scaffold_8-snap.1639-T1
Valid prediction for snap_scaffold_8-snap.1605-T1
Valid prediction for snap_scaffold_8-snap.1622-T1
Valid prediction for GeneMark_model.35147_t
Valid prediction for GeneMark_model.35168_t
Valid prediction for Augustus_model.g13755.t1
Valid prediction for Augustus_model.g13747.t1
Valid prediction for snap_scaffold_8-snap.1632-T1
Valid prediction for GlimmerHMM_glimmerT_20572-T1
Valid prediction for Augustus_model.g13744.t1
Couldn't classify 237066, 237299
Sorry, prediction pasa_asmbl_52939.p1 fails validation.
(ATG)	 AC	235812-235901	GT	AGG
(ATT)	 AG	236297-236408	GT	TGG
(ATG)	 AG	236548-236711	GT	AGG
(GCG)	 AG	237066-237299	GT	CCG
-recovered pasa_asmbl_52939.p1, initial, 235812, 235901
add_exon() Sorry, pasa_asmbl_52939.p1 236548-236711-initial-1 is invalid.
-recovered pasa_asmbl_52939.p1, initial, 236548, 236711
-recovered pasa_asmbl_52939.p1, internal, 236297, 236408
-recovered pasa_asmbl_52939.p1, internal, 236548, 236711
-recovered pasa_asmbl_52939.p1, internal, 237066, 237299
Valid prediction for snap_scaffold_8-snap.1630-T1
Valid prediction for snap_scaffold_8-snap.1644-T1
Valid prediction for GeneMark_model.35169_t
Valid prediction for HiQ_model.g13754.t1
Valid prediction for GlimmerHMM_glimmerT_20567-T1
Valid prediction for GeneMark_model.35156_t
Valid prediction for GeneMark_model.35170_t
Valid prediction for GeneMark_model.35144_t
Valid prediction for GlimmerHMM_glimmerT_20550-T1
Valid prediction for snap_scaffold_8-snap.1629-T1
Valid prediction for GeneMark_model.35123_t
Valid prediction for Augustus_model.g13740.t1
Valid prediction for snap_scaffold_8-snap.1637-T1
Valid prediction for GlimmerHMM_glimmerT_20558-T1
Valid prediction for GeneMark_model.35122_t
Valid prediction for GeneMark_model.35167_t
Valid prediction for CodingQuarry_transcript_59557-T1
Valid prediction for snap_scaffold_8-snap.1631-T1
Valid prediction for GeneMark_model.35175_t
Valid prediction for snap_scaffold_8-snap.1617-T1
Valid prediction for GlimmerHMM_glimmerT_20564-T1
Valid prediction for GlimmerHMM_glimmerT_20545-T1
Valid prediction for GlimmerHMM_glimmerT_20556-T1
Valid prediction for Augustus_model.g13761.t1
Valid prediction for GlimmerHMM_glimmerT_20578-T1
Valid prediction for GeneMark_model.35132_t
Valid prediction for snap_scaffold_8-snap.1596-T1
Valid prediction for Augustus_model.g13749.t1
Valid prediction for snap_scaffold_8-snap.1635-T1
Valid prediction for GeneMark_model.35130_t
Valid prediction for GeneMark_model.35177_t
Valid prediction for GeneMark_model.35163_t
Valid prediction for GlimmerHMM_glimmerT_20557-T1
Valid prediction for Augustus_model.g13759.t1
Valid prediction for GlimmerHMM_glimmerT_20547-T1
Valid prediction for GeneMark_model.35146_t
Valid prediction for GeneMark_model.35138_t
Valid prediction for GeneMark_model.35152_t
Valid prediction for snap_scaffold_8-snap.1618-T1
Valid prediction for GlimmerHMM_glimmerT_20548-T1
Valid prediction for GeneMark_model.35173_t
Valid prediction for GlimmerHMM_glimmerT_20560-T1
Valid prediction for snap_scaffold_8-snap.1646-T1
Valid prediction for Augustus_model.g13746.t1
Valid prediction for snap_scaffold_8-snap.1614-T1
Valid prediction for GeneMark_model.35140_t
Valid prediction for GlimmerHMM_glimmerT_20554-T1
Valid prediction for Augustus_model.g13748.t1
Valid prediction for snap_scaffold_8-snap.1606-T1
Valid prediction for snap_scaffold_8-snap.1616-T1
Valid prediction for Augustus_model.g13752.t1
Valid prediction for GeneMark_model.35135_t
Valid prediction for GlimmerHMM_glimmerT_20561-T1
Valid prediction for snap_scaffold_8-snap.1608-T1
Valid prediction for snap_scaffold_8-snap.1626-T1
Valid prediction for snap_scaffold_8-snap.1599-T1
Couldn't classify 122412, 122870
Sorry, prediction pasa_asmbl_52946.p1 fails validation.
(GTT)	 AT	122412-122870	CA	GCC
Valid prediction for GlimmerHMM_glimmerT_20582-T1
Valid prediction for Augustus_model.g13743.t1
Valid prediction for snap_scaffold_8-snap.1642-T1
Valid prediction for Augustus_model.g13760.t1
Valid prediction for GeneMark_model.35128_t
Valid prediction for GeneMark_model.35166_t
Valid prediction for GeneMark_model.35154_t
Valid prediction for GeneMark_model.35125_t
Valid prediction for GeneMark_model.35137_t
Valid prediction for GeneMark_model.35157_t
Valid prediction for GeneMark_model.35142_t
Valid prediction for snap_scaffold_8-snap.1611-T1
Valid prediction for Augustus_model.g13751.t1
Valid prediction for Augustus_model.g13757.t1
Valid prediction for GeneMark_model.35148_t
Valid prediction for GeneMark_model.35133_t
Valid prediction for CodingQuarry_transcript_59556-T1
Valid prediction for GlimmerHMM_glimmerT_20559-T1
Valid prediction for snap_scaffold_8-snap.1634-T1
Valid prediction for GeneMark_model.35161_t
Valid prediction for GeneMark_model.35164_t
Valid prediction for GlimmerHMM_glimmerT_20569-T1
Valid prediction for GlimmerHMM_glimmerT_20573-T1
Valid prediction for GlimmerHMM_glimmerT_20551-T1
Valid prediction for GeneMark_model.35150_t
Valid prediction for CodingQuarry_transcript_59558-T1
Valid prediction for Augustus_model.g13764.t1
Couldn't classify 127616, 128025
Sorry, prediction GlimmerHMM_glimmerT_20571-T1 fails validation.
(ATG)	 CC	118423-119172	GT	AGG
(GAG)	 AG	121788-123046	GT	TGG
(TGG)	 AG	126150-127557	GT	ATG
(AAC)	 AN	127616-128025	GT	TGG
(CCT)	 AG	128871-130246	GT	AGG
(CTG)	 AG	131280-131482	GT	TCG
(TCT)	 AG	132057-132251	GT	ATG
(GCC)	 AG	133920-134078	GC	GAG
-recovered GlimmerHMM_glimmerT_20571-T1, initial, 118423, 119172
-recovered GlimmerHMM_glimmerT_20571-T1, terminal, 133920, 134078
-recovered GlimmerHMM_glimmerT_20571-T1, internal, 121788, 123046
-recovered GlimmerHMM_glimmerT_20571-T1, internal, 126150, 127557
-recovered GlimmerHMM_glimmerT_20571-T1, internal, 128871, 130246
-recovered GlimmerHMM_glimmerT_20571-T1, internal, 131280, 131482
-recovered GlimmerHMM_glimmerT_20571-T1, internal, 132057, 132251
-recovered GlimmerHMM_glimmerT_20571-T1, internal, 133920, 134078
Valid prediction for snap_scaffold_8-snap.1625-T1
Valid prediction for GeneMark_model.35181_t
Valid prediction for snap_scaffold_8-snap.1620-T1
Valid prediction for GlimmerHMM_glimmerT_20562-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17132, rend_intergenic: 14540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40112, rend_intergenic: 17708  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55891, rend_intergenic: 43794  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62290, rend_intergenic: 61096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79234, rend_intergenic: 71686  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80639, rend_intergenic: 80171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85763, rend_intergenic: 80926  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92345, rend_intergenic: 91115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96713, rend_intergenic: 94002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104721, rend_intergenic: 98492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108981, rend_intergenic: 105932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118048, rend_intergenic: 110258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125625, rend_intergenic: 118156  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225734, rend_intergenic: 221026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 238829, rend_intergenic: 226025  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 251886, rend_intergenic: 242226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 262509, rend_intergenic: 258889  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 212177, rend_intergenic: 212174  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 294667
-exon list size: 862


building trellis

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38.9    
39.0    
39.1    
39.2    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.7    
99.8    
99.9    
-found 47 predictions from path traversal
Error with prediction: snap lend_intergenic: 17132, rend_intergenic: 14540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40112, rend_intergenic: 17708  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55891, rend_intergenic: 43794  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62290, rend_intergenic: 61096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79234, rend_intergenic: 71686  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80639, rend_intergenic: 80171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85763, rend_intergenic: 80926  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92345, rend_intergenic: 91115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96713, rend_intergenic: 94002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104721, rend_intergenic: 98492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108981, rend_intergenic: 105932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118048, rend_intergenic: 110258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125625, rend_intergenic: 118156  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225734, rend_intergenic: 221026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 238829, rend_intergenic: 226025  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 251886, rend_intergenic: 242226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 262509, rend_intergenic: 258889  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 212177, rend_intergenic: 212174  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 29 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 260894 - 294667
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 260894 - 290158
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 260894 - 276002
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 260894 - 274146
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 263385 - 274146
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 263385 - 273683
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 276017 - 290158
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 276017 - 290071
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 276017 - 286809
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support