-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_7563078-7760513

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_20468-T1
Valid prediction for GeneMark_model.35003_t
Valid prediction for pasa_asmbl_51980.p1
Valid prediction for snap_scaffold_8-snap.1492-T1
Valid prediction for Augustus_model.g13688.t1
Valid prediction for GeneMark_model.35013_t
Valid prediction for snap_scaffold_8-snap.1494-T1
Valid prediction for GeneMark_model.34999_t
Valid prediction for snap_scaffold_8-snap.1499-T1
Valid prediction for GeneMark_model.34987_t
Valid prediction for snap_scaffold_8-snap.1490-T1
Valid prediction for GeneMark_model.34989_t
Valid prediction for GlimmerHMM_glimmerT_20477-T1
Valid prediction for snap_scaffold_8-snap.1488-T1
Valid prediction for GlimmerHMM_glimmerT_20474-T1
Valid prediction for GeneMark_model.35017_t
Valid prediction for snap_scaffold_8-snap.1498-T1
Valid prediction for GeneMark_model.35012_t
Valid prediction for GeneMark_model.35006_t
Valid prediction for snap_scaffold_8-snap.1482-T1
Valid prediction for GlimmerHMM_glimmerT_20479-T1
Valid prediction for GeneMark_model.34984_t
Valid prediction for GeneMark_model.34996_t
Valid prediction for snap_scaffold_8-snap.1479-T1
Valid prediction for snap_scaffold_8-snap.1480-T1
Valid prediction for GlimmerHMM_glimmerT_20473-T1
Valid prediction for GeneMark_model.34991_t
Valid prediction for HiQ_model.g13695.t1
Valid prediction for GlimmerHMM_glimmerT_20482-T1
Valid prediction for GeneMark_model.34995_t
Valid prediction for GeneMark_model.35001_t
Valid prediction for snap_scaffold_8-snap.1502-T1
Valid prediction for snap_scaffold_8-snap.1486-T1
Valid prediction for GeneMark_model.35004_t
Valid prediction for GeneMark_model.35005_t
Valid prediction for snap_scaffold_8-snap.1483-T1
Valid prediction for snap_scaffold_8-snap.1485-T1
Valid prediction for GeneMark_model.35015_t
Valid prediction for snap_scaffold_8-snap.1489-T1
Valid prediction for GeneMark_model.34986_t
Valid prediction for GeneMark_model.34993_t
Valid prediction for snap_scaffold_8-snap.1500-T1
Valid prediction for GlimmerHMM_glimmerT_20483-T1
Valid prediction for GeneMark_model.35007_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.1496-T1
Valid prediction for snap_scaffold_8-snap.1497-T1
Valid prediction for GeneMark_model.35018_t
Valid prediction for Augustus_model.g13694.t1
Valid prediction for Augustus_model.g13689.t1
Valid prediction for GeneMark_model.34994_t
Valid prediction for Augustus_model.g13697.t1
Valid prediction for GeneMark_model.34992_t
Valid prediction for GeneMark_model.35002_t
Valid prediction for GeneMark_model.35014_t
Valid prediction for GeneMark_model.35008_t
Valid prediction for GeneMark_model.35016_t
Valid prediction for snap_scaffold_8-snap.1484-T1
Valid prediction for Augustus_model.g13690.t1
Valid prediction for Augustus_model.g13691.t1
Valid prediction for snap_scaffold_8-snap.1478-T1
Valid prediction for GlimmerHMM_glimmerT_20480-T1
Valid prediction for GlimmerHMM_glimmerT_20476-T1
Valid prediction for GlimmerHMM_glimmerT_20469-T1
Valid prediction for GlimmerHMM_glimmerT_20475-T1
Valid prediction for GeneMark_model.34990_t
Valid prediction for GeneMark_model.35010_t
Valid prediction for Augustus_model.g13692.t1
Valid prediction for GlimmerHMM_glimmerT_20481-T1
Valid prediction for GlimmerHMM_glimmerT_20470-T1
Valid prediction for GeneMark_model.34997_t
Valid prediction for Augustus_model.g13687.t1
Valid prediction for GeneMark_model.34998_t
Valid prediction for snap_scaffold_8-snap.1503-T1
Valid prediction for GlimmerHMM_glimmerT_20486-T1
Valid prediction for snap_scaffold_8-snap.1481-T1
Valid prediction for snap_scaffold_8-snap.1495-T1
Valid prediction for snap_scaffold_8-snap.1501-T1
Valid prediction for GlimmerHMM_glimmerT_20484-T1
Valid prediction for snap_scaffold_8-snap.1491-T1
Valid prediction for GeneMark_model.34985_t
Valid prediction for GlimmerHMM_glimmerT_20472-T1
Valid prediction for GeneMark_model.35011_t
Valid prediction for GlimmerHMM_glimmerT_20485-T1
Valid prediction for GlimmerHMM_glimmerT_20471-T1
Valid prediction for snap_scaffold_8-snap.1493-T1
Valid prediction for GlimmerHMM_glimmerT_20487-T1
Valid prediction for Augustus_model.g13693.t1
Valid prediction for Augustus_model.g13696.t1
Valid prediction for GeneMark_model.35009_t
Valid prediction for GeneMark_model.34988_t
Valid prediction for snap_scaffold_8-snap.1504-T1
Valid prediction for GeneMark_model.35000_t
Valid prediction for GlimmerHMM_glimmerT_20478-T1
Valid prediction for snap_scaffold_8-snap.1487-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5153, rend_intergenic: 2566  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24613, rend_intergenic: 16951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46401, rend_intergenic: 43844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94812, rend_intergenic: 93637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175784, rend_intergenic: 172579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 197436
-exon list size: 370


building trellis

0.3    
0.5    
0.8    
1.1    
1.3    
1.6    
1.9    
2.2    
2.4    
2.7    
3.0    
3.2    
3.5    
3.8    
4.0    
4.3    
4.6    
4.8    
5.1    
5.4    
5.6    
5.9    
6.2    
6.5    
6.7    
7.0    
7.3    
7.5    
7.8    
8.1    
8.3    
8.6    
8.9    
9.1    
9.4    
9.7    
9.9    
10.2    
10.5    
10.8    
11.0    
11.3    
11.6    
11.8    
12.1    
12.4    
12.6    
12.9    
13.2    
13.4    
13.7    
14.0    
14.2    
14.5    
14.8    
15.1    
15.3    
15.6    
15.9    
16.1    
16.4    
16.7    
16.9    
17.2    
17.5    
17.7    
18.0    
18.3    
18.5    
18.8    
19.1    
19.4    
19.6    
19.9    
20.2    
20.4    
20.7    
21.0    
21.2    
21.5    
21.8    
22.0    
22.3    
22.6    
22.8    
23.1    
23.4    
23.7    
23.9    
24.2    
24.5    
24.7    
25.0    
25.3    
25.5    
25.8    
26.1    
26.3    
26.6    
26.9    
27.2    
27.4    
27.7    
28.0    
28.2    
28.5    
28.8    
29.0    
29.3    
29.6    
29.8    
30.1    
30.4    
30.6    
30.9    
31.2    
31.5    
31.7    
32.0    
32.3    
32.5    
32.8    
33.1    
33.3    
33.6    
33.9    
34.1    
34.4    
34.7    
34.9    
35.2    
35.5    
35.8    
36.0    
36.3    
36.6    
36.8    
37.1    
37.4    
37.6    
37.9    
38.2    
38.4    
38.7    
39.0    
39.2    
39.5    
39.8    
40.1    
40.3    
40.6    
40.9    
41.1    
41.4    
41.7    
41.9    
42.2    
42.5    
42.7    
43.0    
43.3    
43.5    
43.8    
44.1    
44.4    
44.6    
44.9    
45.2    
45.4    
45.7    
46.0    
46.2    
46.5    
46.8    
47.0    
47.3    
47.6    
47.8    
48.1    
48.4    
48.7    
48.9    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.1    
51.3    
51.6    
51.9    
52.2    
52.4    
52.7    
53.0    
53.2    
53.5    
53.8    
54.0    
54.3    
54.6    
54.8    
55.1    
55.4    
55.6    
55.9    
56.2    
56.5    
56.7    
57.0    
57.3    
57.5    
57.8    
58.1    
58.3    
58.6    
58.9    
59.1    
59.4    
59.7    
59.9    
60.2    
60.5    
60.8    
61.0    
61.3    
61.6    
61.8    
62.1    
62.4    
62.6    
62.9    
63.2    
63.4    
63.7    
64.0    
64.2    
64.5    
64.8    
65.1    
65.3    
65.6    
65.9    
66.1    
66.4    
66.7    
66.9    
67.2    
67.5    
67.7    
68.0    
68.3    
68.5    
68.8    
69.1    
69.4    
69.6    
69.9    
70.2    
70.4    
70.7    
71.0    
71.2    
71.5    
71.8    
72.0    
72.3    
72.6    
72.8    
73.1    
73.4    
73.7    
73.9    
74.2    
74.5    
74.7    
75.0    
75.3    
75.5    
75.8    
76.1    
76.3    
76.6    
76.9    
77.2    
77.4    
77.7    
78.0    
78.2    
78.5    
78.8    
79.0    
79.3    
79.6    
79.8    
80.1    
80.4    
80.6    
80.9    
81.2    
81.5    
81.7    
82.0    
82.3    
82.5    
82.8    
83.1    
83.3    
83.6    
83.9    
84.1    
84.4    
84.7    
84.9    
85.2    
85.5    
85.8    
86.0    
86.3    
86.6    
86.8    
87.1    
87.4    
87.6    
87.9    
88.2    
88.4    
88.7    
89.0    
89.2    
89.5    
89.8    
90.1    
90.3    
90.6    
90.9    
91.1    
91.4    
91.7    
91.9    
92.2    
92.5    
92.7    
93.0    
93.3    
93.5    
93.8    
94.1    
94.4    
94.6    
94.9    
95.2    
95.4    
95.7    
96.0    
96.2    
96.5    
96.8    
97.0    
97.3    
97.6    
97.8    
98.1    
98.4    
98.7    
98.9    
99.2    
99.5    
99.7    
-found 19 predictions from path traversal
Error with prediction: snap lend_intergenic: 5153, rend_intergenic: 2566  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24613, rend_intergenic: 16951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46401, rend_intergenic: 43844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94812, rend_intergenic: 93637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175784, rend_intergenic: 172579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support