-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_6992123-7279695

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.1408-T1
Valid prediction for snap_scaffold_8-snap.1410-T1
Valid prediction for GeneMark_model.34905_t
Valid prediction for GeneMark_model.34916_t
Valid prediction for GlimmerHMM_glimmerT_20410-T1
Valid prediction for Augustus_model.g13657.t1
Valid prediction for GlimmerHMM_glimmerT_20418-T1
Valid prediction for GlimmerHMM_glimmerT_20403-T1
Valid prediction for GeneMark_model.34914_t
Valid prediction for GeneMark_model.34901_t
Valid prediction for snap_scaffold_8-snap.1401-T1
Valid prediction for GeneMark_model.34895_t
Valid prediction for GeneMark_model.34917_t
Valid prediction for Augustus_model.g13652.t1
Valid prediction for Augustus_model.g13653.t1
Valid prediction for snap_scaffold_8-snap.1399-T1
Valid prediction for GlimmerHMM_glimmerT_20406-T1
Valid prediction for snap_scaffold_8-snap.1409-T1
Valid prediction for GlimmerHMM_glimmerT_20416-T1
Valid prediction for GlimmerHMM_glimmerT_20415-T1
Valid prediction for snap_scaffold_8-snap.1406-T1
Valid prediction for GlimmerHMM_glimmerT_20409-T1
Valid prediction for Augustus_model.g13659.t1
Valid prediction for snap_scaffold_8-snap.1395-T1
Valid prediction for GlimmerHMM_glimmerT_20405-T1
Valid prediction for snap_scaffold_8-snap.1405-T1
Valid prediction for snap_scaffold_8-snap.1392-T1
Valid prediction for GlimmerHMM_glimmerT_20417-T1
Valid prediction for GlimmerHMM_glimmerT_20412-T1
Valid prediction for snap_scaffold_8-snap.1390-T1
Valid prediction for GlimmerHMM_glimmerT_20401-T1
Valid prediction for snap_scaffold_8-snap.1400-T1
Valid prediction for GeneMark_model.34912_t
Valid prediction for GeneMark_model.34910_t
Valid prediction for GeneMark_model.34909_t
Valid prediction for snap_scaffold_8-snap.1393-T1
Valid prediction for Augustus_model.g13654.t1
Valid prediction for snap_scaffold_8-snap.1397-T1
Valid prediction for Augustus_model.g13658.t1
Valid prediction for snap_scaffold_8-snap.1396-T1
Valid prediction for snap_scaffold_8-snap.1403-T1
Valid prediction for GeneMark_model.34907_t
Valid prediction for GeneMark_model.34896_t
Valid prediction for GeneMark_model.34908_t
Valid prediction for GeneMark_model.34893_t
Valid prediction for Augustus_model.g13660.t1
Valid prediction for GlimmerHMM_glimmerT_20407-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_20411-T1
Valid prediction for Augustus_model.g13655.t1
Valid prediction for snap_scaffold_8-snap.1394-T1
Valid prediction for GeneMark_model.34915_t
Valid prediction for GeneMark_model.34899_t
Valid prediction for snap_scaffold_8-snap.1402-T1
Valid prediction for GeneMark_model.34902_t
Valid prediction for GeneMark_model.34911_t
Valid prediction for GeneMark_model.34913_t
Valid prediction for GeneMark_model.34897_t
Valid prediction for Augustus_model.g13656.t1
Valid prediction for GlimmerHMM_glimmerT_20404-T1
Valid prediction for GeneMark_model.34919_t
Valid prediction for snap_scaffold_8-snap.1404-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.34900_t
Valid prediction for GlimmerHMM_glimmerT_20413-T1
Valid prediction for GlimmerHMM_glimmerT_20408-T1
Valid prediction for GeneMark_model.34903_t
Valid prediction for GeneMark_model.34918_t
Valid prediction for GeneMark_model.34906_t
Valid prediction for snap_scaffold_8-snap.1407-T1
Valid prediction for snap_scaffold_8-snap.1411-T1
Valid prediction for GeneMark_model.34904_t
Valid prediction for GeneMark_model.34898_t
Valid prediction for GeneMark_model.34894_t
Valid prediction for GlimmerHMM_glimmerT_20402-T1
Valid prediction for snap_scaffold_8-snap.1398-T1
Valid prediction for GlimmerHMM_glimmerT_20414-T1
Valid prediction for snap_scaffold_8-snap.1391-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 69704, rend_intergenic: 66826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218752, rend_intergenic: 212771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 272266, rend_intergenic: 268320  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 287573
-exon list size: 299


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.3    
2.7    
3.0    
3.3    
3.7    
4.0    
4.3    
4.7    
5.0    
5.3    
5.6    
6.0    
6.3    
6.6    
7.0    
7.3    
7.6    
8.0    
8.3    
8.6    
9.0    
9.3    
9.6    
10.0    
10.3    
10.6    
11.0    
11.3    
11.6    
12.0    
12.3    
12.6    
13.0    
13.3    
13.6    
14.0    
14.3    
14.6    
15.0    
15.3    
15.6    
15.9    
16.3    
16.6    
16.9    
17.3    
17.6    
17.9    
18.3    
18.6    
18.9    
19.3    
19.6    
19.9    
20.3    
20.6    
20.9    
21.3    
21.6    
21.9    
22.3    
22.6    
22.9    
23.3    
23.6    
23.9    
24.3    
24.6    
24.9    
25.2    
25.6    
25.9    
26.2    
26.6    
26.9    
27.2    
27.6    
27.9    
28.2    
28.6    
28.9    
29.2    
29.6    
29.9    
30.2    
30.6    
30.9    
31.2    
31.6    
31.9    
32.2    
32.6    
32.9    
33.2    
33.6    
33.9    
34.2    
34.6    
34.9    
35.2    
35.5    
35.9    
36.2    
36.5    
36.9    
37.2    
37.5    
37.9    
38.2    
38.5    
38.9    
39.2    
39.5    
39.9    
40.2    
40.5    
40.9    
41.2    
41.5    
41.9    
42.2    
42.5    
42.9    
43.2    
43.5    
43.9    
44.2    
44.5    
44.9    
45.2    
45.5    
45.8    
46.2    
46.5    
46.8    
47.2    
47.5    
47.8    
48.2    
48.5    
48.8    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.2    
51.5    
51.8    
52.2    
52.5    
52.8    
53.2    
53.5    
53.8    
54.2    
54.5    
54.8    
55.1    
55.5    
55.8    
56.1    
56.5    
56.8    
57.1    
57.5    
57.8    
58.1    
58.5    
58.8    
59.1    
59.5    
59.8    
60.1    
60.5    
60.8    
61.1    
61.5    
61.8    
62.1    
62.5    
62.8    
63.1    
63.5    
63.8    
64.1    
64.5    
64.8    
65.1    
65.4    
65.8    
66.1    
66.4    
66.8    
67.1    
67.4    
67.8    
68.1    
68.4    
68.8    
69.1    
69.4    
69.8    
70.1    
70.4    
70.8    
71.1    
71.4    
71.8    
72.1    
72.4    
72.8    
73.1    
73.4    
73.8    
74.1    
74.4    
74.8    
75.1    
75.4    
75.7    
76.1    
76.4    
76.7    
77.1    
77.4    
77.7    
78.1    
78.4    
78.7    
79.1    
79.4    
79.7    
80.1    
80.4    
80.7    
81.1    
81.4    
81.7    
82.1    
82.4    
82.7    
83.1    
83.4    
83.7    
84.1    
84.4    
84.7    
85.0    
85.4    
85.7    
86.0    
86.4    
86.7    
87.0    
87.4    
87.7    
88.0    
88.4    
88.7    
89.0    
89.4    
89.7    
90.0    
90.4    
90.7    
91.0    
91.4    
91.7    
92.0    
92.4    
92.7    
93.0    
93.4    
93.7    
94.0    
94.4    
94.7    
95.0    
95.3    
95.7    
96.0    
96.3    
96.7    
97.0    
97.3    
97.7    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 16 predictions from path traversal
Error with prediction: snap lend_intergenic: 69704, rend_intergenic: 66826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218752, rend_intergenic: 212771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 272266, rend_intergenic: 268320  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 64343
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 61525
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 3944 - 61525
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 3944 - 37183
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 10049 - 37183
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 10049 - 36816
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 10049 - 31246
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 10049 - 22521

-building DP trellis

-building trellis in range 37237 - 61525
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 37237 - 54635
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 43501 - 54635
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 276379 - 287573
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 2 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 277382 - 287573
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support