-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_6597517-6722137

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.1325-T1
Valid prediction for pasa_asmbl_51952.p1
Valid prediction for GeneMark_model.34828_t
Valid prediction for snap_scaffold_8-snap.1333-T1
Valid prediction for Augustus_model.g13627.t1
Valid prediction for Augustus_model.g13616.t1
Valid prediction for snap_scaffold_8-snap.1329-T1
Valid prediction for GeneMark_model.34833_t
Valid prediction for GeneMark_model.34826_t
Valid prediction for snap_scaffold_8-snap.1339-T1
Valid prediction for GlimmerHMM_glimmerT_20348-T1
Valid prediction for GeneMark_model.34814_t
Valid prediction for Augustus_model.g13625.t1
Valid prediction for GeneMark_model.34815_t
Valid prediction for GlimmerHMM_glimmerT_20344-T1
Valid prediction for GeneMark_model.34830_t
Valid prediction for GeneMark_model.34817_t
Valid prediction for Augustus_model.g13615.t1
Valid prediction for GlimmerHMM_glimmerT_20352-T1
Valid prediction for Augustus_model.g13619.t1
Valid prediction for GeneMark_model.34823_t
Valid prediction for GeneMark_model.34825_t
Valid prediction for GlimmerHMM_glimmerT_20349-T1
Valid prediction for snap_scaffold_8-snap.1326-T1
Valid prediction for snap_scaffold_8-snap.1338-T1
Valid prediction for Augustus_model.g13626.t1
Valid prediction for CodingQuarry_transcript_59535-T1
Valid prediction for snap_scaffold_8-snap.1331-T1
Valid prediction for Augustus_model.g13618.t1
Valid prediction for Augustus_model.g13624.t1
Valid prediction for snap_scaffold_8-snap.1337-T1
Valid prediction for GlimmerHMM_glimmerT_20350-T1
Valid prediction for GlimmerHMM_glimmerT_20358-T1
Valid prediction for snap_scaffold_8-snap.1320-T1
Valid prediction for GeneMark_model.34819_t
Valid prediction for snap_scaffold_8-snap.1321-T1
Valid prediction for GlimmerHMM_glimmerT_20345-T1
Valid prediction for snap_scaffold_8-snap.1323-T1
Valid prediction for Augustus_model.g13620.t1
Valid prediction for snap_scaffold_8-snap.1322-T1
Valid prediction for GlimmerHMM_glimmerT_20355-T1
Valid prediction for Augustus_model.g13617.t1
Valid prediction for snap_scaffold_8-snap.1336-T1
Valid prediction for GeneMark_model.34821_t
Valid prediction for GlimmerHMM_glimmerT_20351-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_20354-T1
Valid prediction for snap_scaffold_8-snap.1335-T1
Valid prediction for snap_scaffold_8-snap.1330-T1
Valid prediction for GlimmerHMM_glimmerT_20347-T1
Valid prediction for Augustus_model.g13623.t1
Valid prediction for GeneMark_model.34829_t
Valid prediction for Augustus_model.g13622.t1
Valid prediction for GlimmerHMM_glimmerT_20357-T1
Valid prediction for GeneMark_model.34831_t
Valid prediction for snap_scaffold_8-snap.1340-T1
Valid prediction for GlimmerHMM_glimmerT_20346-T1
Valid prediction for snap_scaffold_8-snap.1328-T1
Valid prediction for GeneMark_model.34816_t
Valid prediction for GeneMark_model.34824_t
Valid prediction for GeneMark_model.34832_t
Valid prediction for snap_scaffold_8-snap.1327-T1
Valid prediction for GeneMark_model.34827_t
Valid prediction for GeneMark_model.34818_t
Valid prediction for snap_scaffold_8-snap.1332-T1
Valid prediction for GeneMark_model.34822_t
Valid prediction for GeneMark_model.34820_t
Valid prediction for snap_scaffold_8-snap.1324-T1
Valid prediction for Augustus_model.g13621.t1
Valid prediction for GlimmerHMM_glimmerT_20353-T1
Valid prediction for snap_scaffold_8-snap.1334-T1
Valid prediction for GlimmerHMM_glimmerT_20356-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 29217, rend_intergenic: 26446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29969, rend_intergenic: 29688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73655, rend_intergenic: 68464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87793, rend_intergenic: 84013  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97004, rend_intergenic: 90723  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 124621
-exon list size: 277


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.2    
2.5    
2.9    
3.2    
3.6    
3.9    
4.3    
4.7    
5.0    
5.4    
5.7    
6.1    
6.5    
6.8    
7.2    
7.5    
7.9    
8.2    
8.6    
9.0    
9.3    
9.7    
10.0    
10.4    
10.8    
11.1    
11.5    
11.8    
12.2    
12.5    
12.9    
13.3    
13.6    
14.0    
14.3    
14.7    
15.1    
15.4    
15.8    
16.1    
16.5    
16.8    
17.2    
17.6    
17.9    
18.3    
18.6    
19.0    
19.4    
19.7    
20.1    
20.4    
20.8    
21.1    
21.5    
21.9    
22.2    
22.6    
22.9    
23.3    
23.7    
24.0    
24.4    
24.7    
25.1    
25.4    
25.8    
26.2    
26.5    
26.9    
27.2    
27.6    
28.0    
28.3    
28.7    
29.0    
29.4    
29.7    
30.1    
30.5    
30.8    
31.2    
31.5    
31.9    
32.3    
32.6    
33.0    
33.3    
33.7    
34.1    
34.4    
34.8    
35.1    
35.5    
35.8    
36.2    
36.6    
36.9    
37.3    
37.6    
38.0    
38.4    
38.7    
39.1    
39.4    
39.8    
40.1    
40.5    
40.9    
41.2    
41.6    
41.9    
42.3    
42.7    
43.0    
43.4    
43.7    
44.1    
44.4    
44.8    
45.2    
45.5    
45.9    
46.2    
46.6    
47.0    
47.3    
47.7    
48.0    
48.4    
48.7    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.3    
51.6    
52.0    
52.3    
52.7    
53.0    
53.4    
53.8    
54.1    
54.5    
54.8    
55.2    
55.6    
55.9    
56.3    
56.6    
57.0    
57.3    
57.7    
58.1    
58.4    
58.8    
59.1    
59.5    
59.9    
60.2    
60.6    
60.9    
61.3    
61.6    
62.0    
62.4    
62.7    
63.1    
63.4    
63.8    
64.2    
64.5    
64.9    
65.2    
65.6    
65.9    
66.3    
66.7    
67.0    
67.4    
67.7    
68.1    
68.5    
68.8    
69.2    
69.5    
69.9    
70.3    
70.6    
71.0    
71.3    
71.7    
72.0    
72.4    
72.8    
73.1    
73.5    
73.8    
74.2    
74.6    
74.9    
75.3    
75.6    
76.0    
76.3    
76.7    
77.1    
77.4    
77.8    
78.1    
78.5    
78.9    
79.2    
79.6    
79.9    
80.3    
80.6    
81.0    
81.4    
81.7    
82.1    
82.4    
82.8    
83.2    
83.5    
83.9    
84.2    
84.6    
84.9    
85.3    
85.7    
86.0    
86.4    
86.7    
87.1    
87.5    
87.8    
88.2    
88.5    
88.9    
89.2    
89.6    
90.0    
90.3    
90.7    
91.0    
91.4    
91.8    
92.1    
92.5    
92.8    
93.2    
93.5    
93.9    
94.3    
94.6    
95.0    
95.3    
95.7    
96.1    
96.4    
96.8    
97.1    
97.5    
97.8    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 20 predictions from path traversal
Error with prediction: snap lend_intergenic: 29217, rend_intergenic: 26446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29969, rend_intergenic: 29688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73655, rend_intergenic: 68464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87793, rend_intergenic: 84013  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97004, rend_intergenic: 90723  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10166
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support