-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_6442547-6602529

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.1314-T1
Valid prediction for snap_scaffold_8-snap.1293-T1
Valid prediction for snap_scaffold_8-snap.1305-T1
Valid prediction for snap_scaffold_8-snap.1303-T1
Valid prediction for GeneMark_model.34784_t
Valid prediction for GeneMark_model.34804_t
Valid prediction for snap_scaffold_8-snap.1296-T1
Valid prediction for snap_scaffold_8-snap.1292-T1
Valid prediction for GlimmerHMM_glimmerT_20333-T1
Valid prediction for Augustus_model.g13600.t1
Valid prediction for GeneMark_model.34791_t
Valid prediction for Augustus_model.g13602.t1
Valid prediction for GlimmerHMM_glimmerT_20330-T1
Valid prediction for snap_scaffold_8-snap.1319-T1
Valid prediction for Augustus_model.g13613.t1
Valid prediction for GeneMark_model.34782_t
Valid prediction for snap_scaffold_8-snap.1317-T1
Valid prediction for snap_scaffold_8-snap.1311-T1
Valid prediction for snap_scaffold_8-snap.1312-T1
Valid prediction for GeneMark_model.34809_t
Valid prediction for GeneMark_model.34795_t
Valid prediction for Augustus_model.g13610.t1
Valid prediction for snap_scaffold_8-snap.1299-T1
Valid prediction for GlimmerHMM_glimmerT_20324-T1
Valid prediction for Augustus_model.g13605.t1
Valid prediction for GlimmerHMM_glimmerT_20331-T1
Valid prediction for GeneMark_model.34797_t
Valid prediction for GeneMark_model.34787_t
Valid prediction for snap_scaffold_8-snap.1318-T1
Valid prediction for GlimmerHMM_glimmerT_20322-T1
Valid prediction for Augustus_model.g13603.t1
Valid prediction for GeneMark_model.34794_t
Valid prediction for Augustus_model.g13612.t1
Valid prediction for GlimmerHMM_glimmerT_20337-T1
Valid prediction for GeneMark_model.34811_t
Valid prediction for GeneMark_model.34786_t
Valid prediction for GeneMark_model.34807_t
Valid prediction for GlimmerHMM_glimmerT_20339-T1
Valid prediction for GeneMark_model.34793_t
Valid prediction for GlimmerHMM_glimmerT_20334-T1
Valid prediction for GlimmerHMM_glimmerT_20325-T1
Valid prediction for GeneMark_model.34800_t
Valid prediction for snap_scaffold_8-snap.1302-T1
Valid prediction for Augustus_model.g13607.t1
Valid prediction for GlimmerHMM_glimmerT_20340-T1
Valid prediction for snap_scaffold_8-snap.1298-T1
Valid prediction for GlimmerHMM_glimmerT_20342-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.34806_t
Valid prediction for Augustus_model.g13609.t1
Valid prediction for snap_scaffold_8-snap.1310-T1
Valid prediction for snap_scaffold_8-snap.1297-T1
Valid prediction for GeneMark_model.34792_t
Valid prediction for GeneMark_model.34802_t
Valid prediction for GlimmerHMM_glimmerT_20326-T1
Valid prediction for snap_scaffold_8-snap.1304-T1
Valid prediction for GeneMark_model.34796_t
Valid prediction for GeneMark_model.34808_t
Valid prediction for snap_scaffold_8-snap.1306-T1
Valid prediction for Augustus_model.g13611.t1
Valid prediction for GeneMark_model.34810_t
Valid prediction for GlimmerHMM_glimmerT_20328-T1
Valid prediction for GeneMark_model.34805_t
Valid prediction for GeneMark_model.34798_t
Valid prediction for snap_scaffold_8-snap.1309-T1
Valid prediction for snap_scaffold_8-snap.1308-T1
Valid prediction for snap_scaffold_8-snap.1295-T1
Valid prediction for snap_scaffold_8-snap.1313-T1
Valid prediction for GeneMark_model.34801_t
Valid prediction for GlimmerHMM_glimmerT_20332-T1
Valid prediction for snap_scaffold_8-snap.1315-T1
Valid prediction for GeneMark_model.34781_t
Valid prediction for Augustus_model.g13606.t1
Valid prediction for GeneMark_model.34785_t
Valid prediction for Augustus_model.g13601.t1
Valid prediction for GlimmerHMM_glimmerT_20327-T1
Valid prediction for snap_scaffold_8-snap.1289-T1
Valid prediction for snap_scaffold_8-snap.1291-T1
Valid prediction for GeneMark_model.34788_t
Valid prediction for Augustus_model.g13614.t1
Valid prediction for snap_scaffold_8-snap.1290-T1
Valid prediction for snap_scaffold_8-snap.1301-T1
Valid prediction for Augustus_model.g13599.t1
Valid prediction for GlimmerHMM_glimmerT_20336-T1
Valid prediction for GeneMark_model.34803_t
Valid prediction for snap_scaffold_8-snap.1294-T1
Valid prediction for GeneMark_model.34812_t
Valid prediction for Augustus_model.g13608.t1
Valid prediction for snap_scaffold_8-snap.1307-T1
Valid prediction for snap_scaffold_8-snap.1316-T1
Valid prediction for GlimmerHMM_glimmerT_20335-T1
Valid prediction for Augustus_model.g13604.t1
Valid prediction for GeneMark_model.34783_t
Valid prediction for GlimmerHMM_glimmerT_20341-T1
Valid prediction for snap_scaffold_8-snap.1300-T1
Valid prediction for GlimmerHMM_glimmerT_20338-T1
Valid prediction for GeneMark_model.34799_t
Valid prediction for GlimmerHMM_glimmerT_20329-T1
Valid prediction for GeneMark_model.34789_t
Valid prediction for GeneMark_model.34790_t
Valid prediction for GlimmerHMM_glimmerT_20323-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15086, rend_intergenic: 12181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38783, rend_intergenic: 34075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51693, rend_intergenic: 48567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62013, rend_intergenic: 58581  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79012, rend_intergenic: 72130  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 159983
-exon list size: 431


building trellis

0.2    
0.5    
0.7    
0.9    
1.2    
1.4    
1.6    
1.8    
2.1    
2.3    
2.5    
2.8    
3.0    
3.2    
3.5    
3.7    
3.9    
4.2    
4.4    
4.6    
4.8    
5.1    
5.3    
5.5    
5.8    
6.0    
6.2    
6.5    
6.7    
6.9    
7.2    
7.4    
7.6    
7.9    
8.1    
8.3    
8.5    
8.8    
9.0    
9.2    
9.5    
9.7    
9.9    
10.2    
10.4    
10.6    
10.9    
11.1    
11.3    
11.5    
11.8    
12.0    
12.2    
12.5    
12.7    
12.9    
13.2    
13.4    
13.6    
13.9    
14.1    
14.3    
14.5    
14.8    
15.0    
15.2    
15.5    
15.7    
15.9    
16.2    
16.4    
16.6    
16.9    
17.1    
17.3    
17.6    
17.8    
18.0    
18.2    
18.5    
18.7    
18.9    
19.2    
19.4    
19.6    
19.9    
20.1    
20.3    
20.6    
20.8    
21.0    
21.2    
21.5    
21.7    
21.9    
22.2    
22.4    
22.6    
22.9    
23.1    
23.3    
23.6    
23.8    
24.0    
24.2    
24.5    
24.7    
24.9    
25.2    
25.4    
25.6    
25.9    
26.1    
26.3    
26.6    
26.8    
27.0    
27.3    
27.5    
27.7    
27.9    
28.2    
28.4    
28.6    
28.9    
29.1    
29.3    
29.6    
29.8    
30.0    
30.3    
30.5    
30.7    
30.9    
31.2    
31.4    
31.6    
31.9    
32.1    
32.3    
32.6    
32.8    
33.0    
33.3    
33.5    
33.7    
33.9    
34.2    
34.4    
34.6    
34.9    
35.1    
35.3    
35.6    
35.8    
36.0    
36.3    
36.5    
36.7    
37.0    
37.2    
37.4    
37.6    
37.9    
38.1    
38.3    
38.6    
38.8    
39.0    
39.3    
39.5    
39.7    
40.0    
40.2    
40.4    
40.6    
40.9    
41.1    
41.3    
41.6    
41.8    
42.0    
42.3    
42.5    
42.7    
43.0    
43.2    
43.4    
43.6    
43.9    
44.1    
44.3    
44.6    
44.8    
45.0    
45.3    
45.5    
45.7    
46.0    
46.2    
46.4    
46.7    
46.9    
47.1    
47.3    
47.6    
47.8    
48.0    
48.3    
48.5    
48.7    
49.0    
49.2    
49.4    
49.7    
49.9    
50.1    
50.3    
50.6    
50.8    
51.0    
51.3    
51.5    
51.7    
52.0    
52.2    
52.4    
52.7    
52.9    
53.1    
53.3    
53.6    
53.8    
54.0    
54.3    
54.5    
54.7    
55.0    
55.2    
55.4    
55.7    
55.9    
56.1    
56.4    
56.6    
56.8    
57.0    
57.3    
57.5    
57.7    
58.0    
58.2    
58.4    
58.7    
58.9    
59.1    
59.4    
59.6    
59.8    
60.0    
60.3    
60.5    
60.7    
61.0    
61.2    
61.4    
61.7    
61.9    
62.1    
62.4    
62.6    
62.8    
63.0    
63.3    
63.5    
63.7    
64.0    
64.2    
64.4    
64.7    
64.9    
65.1    
65.4    
65.6    
65.8    
66.1    
66.3    
66.5    
66.7    
67.0    
67.2    
67.4    
67.7    
67.9    
68.1    
68.4    
68.6    
68.8    
69.1    
69.3    
69.5    
69.7    
70.0    
70.2    
70.4    
70.7    
70.9    
71.1    
71.4    
71.6    
71.8    
72.1    
72.3    
72.5    
72.7    
73.0    
73.2    
73.4    
73.7    
73.9    
74.1    
74.4    
74.6    
74.8    
75.1    
75.3    
75.5    
75.8    
76.0    
76.2    
76.4    
76.7    
76.9    
77.1    
77.4    
77.6    
77.8    
78.1    
78.3    
78.5    
78.8    
79.0    
79.2    
79.4    
79.7    
79.9    
80.1    
80.4    
80.6    
80.8    
81.1    
81.3    
81.5    
81.8    
82.0    
82.2    
82.4    
82.7    
82.9    
83.1    
83.4    
83.6    
83.8    
84.1    
84.3    
84.5    
84.8    
85.0    
85.2    
85.5    
85.7    
85.9    
86.1    
86.4    
86.6    
86.8    
87.1    
87.3    
87.5    
87.8    
88.0    
88.2    
88.5    
88.7    
88.9    
89.1    
89.4    
89.6    
89.8    
90.1    
90.3    
90.5    
90.8    
91.0    
91.2    
91.5    
91.7    
91.9    
92.1    
92.4    
92.6    
92.8    
93.1    
93.3    
93.5    
93.8    
94.0    
94.2    
94.5    
94.7    
94.9    
95.2    
95.4    
95.6    
95.8    
96.1    
96.3    
96.5    
96.8    
97.0    
97.2    
97.5    
97.7    
97.9    
98.2    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 15086, rend_intergenic: 12181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38783, rend_intergenic: 34075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51693, rend_intergenic: 48567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62013, rend_intergenic: 58581  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79012, rend_intergenic: 72130  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support