-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_5397992-5528078

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_20208-T1
Valid prediction for GeneMark_model.34622_t
Valid prediction for GlimmerHMM_glimmerT_20209-T1
Valid prediction for GeneMark_model.34612_t
Valid prediction for GlimmerHMM_glimmerT_20204-T1
Valid prediction for GlimmerHMM_glimmerT_20213-T1
Valid prediction for GeneMark_model.34615_t
Valid prediction for snap_scaffold_8-snap.1102-T1
Valid prediction for GlimmerHMM_glimmerT_20211-T1
Valid prediction for GlimmerHMM_glimmerT_20212-T1
Valid prediction for GeneMark_model.34626_t
Valid prediction for snap_scaffold_8-snap.1110-T1
Valid prediction for GeneMark_model.34627_t
Valid prediction for GeneMark_model.34604_t
Valid prediction for Augustus_model.g13511.t1
Valid prediction for GeneMark_model.34596_t
Valid prediction for GeneMark_model.34598_t
Valid prediction for snap_scaffold_8-snap.1108-T1
Valid prediction for snap_scaffold_8-snap.1098-T1
Valid prediction for Augustus_model.g13510.t1
Valid prediction for snap_scaffold_8-snap.1105-T1
Valid prediction for Augustus_model.g13502.t1
Valid prediction for GeneMark_model.34600_t
Valid prediction for GeneMark_model.34613_t
Valid prediction for GlimmerHMM_glimmerT_20217-T1
Valid prediction for GeneMark_model.34594_t
Valid prediction for GeneMark_model.34605_t
Valid prediction for GeneMark_model.34610_t
Valid prediction for HiQ_model.g13495.t1
Valid prediction for GlimmerHMM_glimmerT_20216-T1
Valid prediction for GeneMark_model.34592_t
Valid prediction for snap_scaffold_8-snap.1118-T1
Valid prediction for pasa_asmbl_51870.p1
Valid prediction for snap_scaffold_8-snap.1097-T1
Valid prediction for CodingQuarry_transcript_59510-T1
Valid prediction for snap_scaffold_8-snap.1109-T1
Valid prediction for GeneMark_model.34618_t
Valid prediction for GlimmerHMM_glimmerT_20198-T1
Valid prediction for GeneMark_model.34628_t
Valid prediction for Augustus_model.g13512.t1
Valid prediction for Augustus_model.g13504.t1
Valid prediction for GeneMark_model.34601_t
Valid prediction for GeneMark_model.34602_t
Valid prediction for snap_scaffold_8-snap.1115-T1
Valid prediction for snap_scaffold_8-snap.1114-T1
Valid prediction for GlimmerHMM_glimmerT_20200-T1
Valid prediction for snap_scaffold_8-snap.1107-T1
Valid prediction for GeneMark_model.34624_t
Valid prediction for Augustus_model.g13503.t1
Valid prediction for GlimmerHMM_glimmerT_20202-T1
Valid prediction for CodingQuarry_transcript_59509-T1
Valid prediction for Augustus_model.g13500.t1
Valid prediction for GeneMark_model.34606_t
Valid prediction for GeneMark_model.34608_t
Valid prediction for GlimmerHMM_glimmerT_20218-T1
Valid prediction for GlimmerHMM_glimmerT_20201-T1
Valid prediction for Augustus_model.g13506.t1
Valid prediction for snap_scaffold_8-snap.1117-T1
Valid prediction for GeneMark_model.34620_t
Valid prediction for snap_scaffold_8-snap.1113-T1
Valid prediction for Augustus_model.g13507.t1
Valid prediction for snap_scaffold_8-snap.1096-T1
Valid prediction for GlimmerHMM_glimmerT_20207-T1
Valid prediction for Augustus_model.g13508.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.1111-T1
Valid prediction for Augustus_model.g13496.t1
Valid prediction for GlimmerHMM_glimmerT_20210-T1
Valid prediction for Augustus_model.g13499.t1
Valid prediction for snap_scaffold_8-snap.1104-T1
Valid prediction for GlimmerHMM_glimmerT_20214-T1
Valid prediction for GeneMark_model.34623_t
Valid prediction for GeneMark_model.34621_t
Valid prediction for snap_scaffold_8-snap.1112-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_20206-T1
Valid prediction for GeneMark_model.34593_t
Valid prediction for snap_scaffold_8-snap.1099-T1
Valid prediction for GeneMark_model.34595_t
Valid prediction for GeneMark_model.34611_t
Valid prediction for GlimmerHMM_glimmerT_20203-T1
Valid prediction for snap_scaffold_8-snap.1092-T1
Valid prediction for snap_scaffold_8-snap.1100-T1
Valid prediction for snap_scaffold_8-snap.1119-T1
Valid prediction for GeneMark_model.34603_t
Valid prediction for GeneMark_model.34609_t
Valid prediction for Augustus_model.g13509.t1
Valid prediction for GeneMark_model.34619_t
Valid prediction for GlimmerHMM_glimmerT_20219-T1
Valid prediction for GeneMark_model.34597_t
Couldn't classify 107747, 108098
Couldn't classify 109374, 109609
Sorry, prediction pasa_asmbl_52825.p1 fails validation.
(GCT)	 CA	107747-108098	GT	TGG
(CCC)	 AG	109374-109609	TT	CCT
Valid prediction for snap_scaffold_8-snap.1116-T1
Valid prediction for Augustus_model.g13498.t1
Valid prediction for snap_scaffold_8-snap.1101-T1
Valid prediction for GlimmerHMM_glimmerT_20197-T1
Valid prediction for snap_scaffold_8-snap.1094-T1
Valid prediction for Augustus_model.g13497.t1
Valid prediction for snap_scaffold_8-snap.1095-T1
Valid prediction for Augustus_model.g13494.t1
Valid prediction for Augustus_model.g13505.t1
Valid prediction for GeneMark_model.34625_t
Valid prediction for snap_scaffold_8-snap.1103-T1
Valid prediction for GeneMark_model.34614_t
Valid prediction for snap_scaffold_8-snap.1120-T1
Valid prediction for GeneMark_model.34599_t
Valid prediction for Augustus_model.g13501.t1
Valid prediction for snap_scaffold_8-snap.1093-T1
Valid prediction for GeneMark_model.34607_t
Valid prediction for snap_scaffold_8-snap.1106-T1
Valid prediction for Augustus_model.g13493.t1
Valid prediction for Augustus_model.g13492.t1
Valid prediction for GlimmerHMM_glimmerT_20215-T1
Valid prediction for GlimmerHMM_glimmerT_20199-T1
Valid prediction for GeneMark_model.34616_t
Valid prediction for GeneMark_model.34617_t
Valid prediction for GlimmerHMM_glimmerT_20205-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 27700, rend_intergenic: 23848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54413, rend_intergenic: 54355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56012, rend_intergenic: 54577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61574, rend_intergenic: 60610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63842, rend_intergenic: 61968  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71196, rend_intergenic: 63921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109045, rend_intergenic: 99073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114330, rend_intergenic: 113525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 130087
-exon list size: 441


building trellis

0.2    
0.5    
0.7    
0.9    
1.1    
1.4    
1.6    
1.8    
2.0    
2.3    
2.5    
2.7    
2.9    
3.2    
3.4    
3.6    
3.8    
4.1    
4.3    
4.5    
4.7    
5.0    
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5.4    
5.6    
5.9    
6.1    
6.3    
6.5    
6.8    
7.0    
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7.4    
7.7    
7.9    
8.1    
8.4    
8.6    
8.8    
9.0    
9.3    
9.5    
9.7    
9.9    
10.2    
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10.6    
10.8    
11.1    
11.3    
11.5    
11.7    
12.0    
12.2    
12.4    
12.6    
12.9    
13.1    
13.3    
13.5    
13.8    
14.0    
14.2    
14.4    
14.7    
14.9    
15.1    
15.3    
15.6    
15.8    
16.0    
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16.7    
16.9    
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17.6    
17.8    
18.1    
18.3    
18.5    
18.7    
19.0    
19.2    
19.4    
19.6    
19.9    
20.1    
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20.5    
20.8    
21.0    
21.2    
21.4    
21.7    
21.9    
22.1    
22.3    
22.6    
22.8    
23.0    
23.3    
23.5    
23.7    
23.9    
24.2    
24.4    
24.6    
24.8    
25.1    
25.3    
25.5    
25.7    
26.0    
26.2    
26.4    
26.6    
26.9    
27.1    
27.3    
27.5    
27.8    
28.0    
28.2    
28.4    
28.7    
28.9    
29.1    
29.3    
29.6    
29.8    
30.0    
30.2    
30.5    
30.7    
30.9    
31.2    
31.4    
31.6    
31.8    
32.1    
32.3    
32.5    
32.7    
33.0    
33.2    
33.4    
33.6    
33.9    
34.1    
34.3    
34.5    
34.8    
35.0    
35.2    
35.4    
35.7    
35.9    
36.1    
36.3    
36.6    
36.8    
37.0    
37.2    
37.5    
37.7    
37.9    
38.1    
38.4    
38.6    
38.8    
39.1    
39.3    
39.5    
39.7    
40.0    
40.2    
40.4    
40.6    
40.9    
41.1    
41.3    
41.5    
41.8    
42.0    
42.2    
42.4    
42.7    
42.9    
43.1    
43.3    
43.6    
43.8    
44.0    
44.2    
44.5    
44.7    
44.9    
45.1    
45.4    
45.6    
45.8    
46.0    
46.3    
46.5    
46.7    
47.0    
47.2    
47.4    
47.6    
47.9    
48.1    
48.3    
48.5    
48.8    
49.0    
49.2    
49.4    
49.7    
49.9    
50.1    
50.3    
50.6    
50.8    
51.0    
51.2    
51.5    
51.7    
51.9    
52.1    
52.4    
52.6    
52.8    
53.0    
53.3    
53.5    
53.7    
54.0    
54.2    
54.4    
54.6    
54.9    
55.1    
55.3    
55.5    
55.8    
56.0    
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56.4    
56.7    
56.9    
57.1    
57.3    
57.6    
57.8    
58.0    
58.2    
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58.9    
59.1    
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59.6    
59.8    
60.0    
60.3    
60.5    
60.7    
60.9    
61.2    
61.4    
61.6    
61.9    
62.1    
62.3    
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62.8    
63.0    
63.2    
63.4    
63.7    
63.9    
64.1    
64.3    
64.6    
64.8    
65.0    
65.2    
65.5    
65.7    
65.9    
66.1    
66.4    
66.6    
66.8    
67.0    
67.3    
67.5    
67.7    
67.9    
68.2    
68.4    
68.6    
68.8    
69.1    
69.3    
69.5    
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70.0    
70.2    
70.4    
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71.3    
71.6    
71.8    
72.0    
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72.9    
73.1    
73.4    
73.6    
73.8    
74.0    
74.3    
74.5    
74.7    
74.9    
75.2    
75.4    
75.6    
75.8    
76.1    
76.3    
76.5    
76.7    
77.0    
77.2    
77.4    
77.7    
77.9    
78.1    
78.3    
78.6    
78.8    
79.0    
79.2    
79.5    
79.7    
79.9    
80.1    
80.4    
80.6    
80.8    
81.0    
81.3    
81.5    
81.7    
81.9    
82.2    
82.4    
82.6    
82.8    
83.1    
83.3    
83.5    
83.7    
84.0    
84.2    
84.4    
84.7    
84.9    
85.1    
85.3    
85.6    
85.8    
86.0    
86.2    
86.5    
86.7    
86.9    
87.1    
87.4    
87.6    
87.8    
88.0    
88.3    
88.5    
88.7    
88.9    
89.2    
89.4    
89.6    
89.8    
90.1    
90.3    
90.5    
90.7    
91.0    
91.2    
91.4    
91.6    
91.9    
92.1    
92.3    
92.6    
92.8    
93.0    
93.2    
93.5    
93.7    
93.9    
94.1    
94.4    
94.6    
94.8    
95.0    
95.3    
95.5    
95.7    
95.9    
96.2    
96.4    
96.6    
96.8    
97.1    
97.3    
97.5    
97.7    
98.0    
98.2    
98.4    
98.6    
98.9    
99.1    
99.3    
99.5    
99.8    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 27700, rend_intergenic: 23848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54413, rend_intergenic: 54355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56012, rend_intergenic: 54577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61574, rend_intergenic: 60610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63842, rend_intergenic: 61968  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71196, rend_intergenic: 63921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109045, rend_intergenic: 99073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114330, rend_intergenic: 113525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support