-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_5192791-5403600

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.1076-T1
Valid prediction for GlimmerHMM_glimmerT_20181-T1
Valid prediction for snap_scaffold_8-snap.1062-T1
Valid prediction for GeneMark_model.34590_t
Valid prediction for GeneMark_model.34577_t
Valid prediction for Augustus_model.g13478.t1
Valid prediction for snap_scaffold_8-snap.1060-T1
Valid prediction for Augustus_model.g13487.t1
Valid prediction for GlimmerHMM_glimmerT_20182-T1
Valid prediction for snap_scaffold_8-snap.1068-T1
Valid prediction for GlimmerHMM_glimmerT_20188-T1
Valid prediction for GlimmerHMM_glimmerT_20178-T1
Valid prediction for Augustus_model.g13483.t1
Valid prediction for GeneMark_model.34564_t
Valid prediction for snap_scaffold_8-snap.1073-T1
Valid prediction for snap_scaffold_8-snap.1088-T1
Valid prediction for Augustus_model.g13485.t1
Valid prediction for snap_scaffold_8-snap.1067-T1
Valid prediction for GlimmerHMM_glimmerT_20183-T1
Valid prediction for GeneMark_model.34582_t
Valid prediction for GlimmerHMM_glimmerT_20171-T1
Valid prediction for snap_scaffold_8-snap.1090-T1
Valid prediction for GlimmerHMM_glimmerT_20195-T1
Valid prediction for GeneMark_model.34561_t
Valid prediction for GeneMark_model.34550_t
Valid prediction for GeneMark_model.34584_t
Valid prediction for GeneMark_model.34567_t
Valid prediction for GeneMark_model.34581_t
Valid prediction for GeneMark_model.34562_t
Valid prediction for GeneMark_model.34558_t
Valid prediction for GeneMark_model.34552_t
Valid prediction for GlimmerHMM_glimmerT_20172-T1
Valid prediction for GlimmerHMM_glimmerT_20192-T1
Valid prediction for GeneMark_model.34580_t
Valid prediction for GlimmerHMM_glimmerT_20187-T1
Valid prediction for GeneMark_model.34553_t
Valid prediction for snap_scaffold_8-snap.1084-T1
Valid prediction for GlimmerHMM_glimmerT_20190-T1
Valid prediction for snap_scaffold_8-snap.1069-T1
Valid prediction for GeneMark_model.34576_t
Valid prediction for Augustus_model.g13490.t1
Valid prediction for GeneMark_model.34588_t
Valid prediction for GlimmerHMM_glimmerT_20186-T1
Valid prediction for GeneMark_model.34574_t
Valid prediction for GeneMark_model.34587_t
Valid prediction for GeneMark_model.34551_t
Valid prediction for snap_scaffold_8-snap.1072-T1
Valid prediction for GeneMark_model.34571_t
Valid prediction for GlimmerHMM_glimmerT_20193-T1
Valid prediction for GeneMark_model.34589_t
Valid prediction for Augustus_model.g13477.t1
Valid prediction for GlimmerHMM_glimmerT_20174-T1
Valid prediction for GeneMark_model.34566_t
Valid prediction for Augustus_model.g13491.t1
Valid prediction for snap_scaffold_8-snap.1085-T1
Valid prediction for GeneMark_model.34569_t
Valid prediction for GeneMark_model.34578_t
Valid prediction for GeneMark_model.34548_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_20177-T1
Valid prediction for snap_scaffold_8-snap.1058-T1
Valid prediction for GlimmerHMM_glimmerT_20180-T1
Valid prediction for GlimmerHMM_glimmerT_20170-T1
Valid prediction for GlimmerHMM_glimmerT_20189-T1
Valid prediction for snap_scaffold_8-snap.1071-T1
Couldn't classify 185748, 185888
Sorry, prediction pasa_asmbl_52819.p1 fails validation.
(GAT)	 TG	185748-185888	GT	AGG
(GGT)	 AG	186235-186330	GT	AGG
(CTT)	 AG	186691-186806	GT	CAG
(GTC)	 AG	187379-187385	TG	GAT
-recovered pasa_asmbl_52819.p1, terminal, 187379, 187385
-recovered pasa_asmbl_52819.p1, internal, 186235, 186330
-recovered pasa_asmbl_52819.p1, internal, 186691, 186806
Valid prediction for snap_scaffold_8-snap.1089-T1
Valid prediction for GlimmerHMM_glimmerT_20179-T1
Valid prediction for snap_scaffold_8-snap.1061-T1
Valid prediction for GeneMark_model.34559_t
Valid prediction for snap_scaffold_8-snap.1063-T1
Valid prediction for snap_scaffold_8-snap.1070-T1
Valid prediction for snap_scaffold_8-snap.1087-T1
Valid prediction for snap_scaffold_8-snap.1078-T1
Valid prediction for GlimmerHMM_glimmerT_20191-T1
Valid prediction for Augustus_model.g13484.t1
Valid prediction for GeneMark_model.34572_t
Valid prediction for snap_scaffold_8-snap.1064-T1
Valid prediction for GeneMark_model.34583_t
Valid prediction for GlimmerHMM_glimmerT_20194-T1
Valid prediction for GlimmerHMM_glimmerT_20173-T1
Valid prediction for snap_scaffold_8-snap.1086-T1
Valid prediction for GeneMark_model.34556_t
Valid prediction for snap_scaffold_8-snap.1081-T1
Valid prediction for GlimmerHMM_glimmerT_20176-T1
Valid prediction for snap_scaffold_8-snap.1057-T1
Valid prediction for GeneMark_model.34585_t
Valid prediction for snap_scaffold_8-snap.1074-T1
Valid prediction for snap_scaffold_8-snap.1079-T1
Valid prediction for Augustus_model.g13488.t1
Valid prediction for Augustus_model.g13492.t1
Valid prediction for snap_scaffold_8-snap.1075-T1
Valid prediction for GeneMark_model.34555_t
Valid prediction for Augustus_model.g13480.t1
Valid prediction for snap_scaffold_8-snap.1091-T1
Valid prediction for GeneMark_model.34570_t
Valid prediction for snap_scaffold_8-snap.1083-T1
Valid prediction for GeneMark_model.34557_t
Valid prediction for Augustus_model.g13489.t1
Valid prediction for GeneMark_model.34549_t
Valid prediction for Augustus_model.g13482.t1
Valid prediction for snap_scaffold_8-snap.1092-T1
Valid prediction for GeneMark_model.34568_t
Valid prediction for GeneMark_model.34565_t
Valid prediction for GeneMark_model.34586_t
Valid prediction for GlimmerHMM_glimmerT_20175-T1
Valid prediction for GlimmerHMM_glimmerT_20185-T1
Valid prediction for GeneMark_model.34560_t
Valid prediction for GeneMark_model.34575_t
Valid prediction for GeneMark_model.34573_t
Valid prediction for Augustus_model.g13486.t1
Valid prediction for GlimmerHMM_glimmerT_20184-T1
Valid prediction for GeneMark_model.34554_t
Valid prediction for snap_scaffold_8-snap.1065-T1
Valid prediction for GeneMark_model.34579_t
Valid prediction for Augustus_model.g13481.t1
Valid prediction for Augustus_model.g13479.t1
Valid prediction for GeneMark_model.34591_t
Valid prediction for snap_scaffold_8-snap.1080-T1
Valid prediction for GeneMark_model.34563_t
Valid prediction for GlimmerHMM_glimmerT_20196-T1
Valid prediction for snap_scaffold_8-snap.1066-T1
Valid prediction for snap_scaffold_8-snap.1082-T1
Valid prediction for snap_scaffold_8-snap.1077-T1
Valid prediction for snap_scaffold_8-snap.1059-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 77723, rend_intergenic: 75370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91101, rend_intergenic: 83305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101147, rend_intergenic: 98768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203507, rend_intergenic: 202282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205201, rend_intergenic: 203507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 210810
-exon list size: 461


building trellis

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98.1    
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98.9    
99.1    
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99.6    
99.8    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 77723, rend_intergenic: 75370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91101, rend_intergenic: 83305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101147, rend_intergenic: 98768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203507, rend_intergenic: 202282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205201, rend_intergenic: 203507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support