-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_2336851-2656514

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.33792_t
Valid prediction for GeneMark_model.33823_t
Valid prediction for GeneMark_model.33810_t
Valid prediction for GlimmerHMM_glimmerT_19790-T1
Valid prediction for GeneMark_model.33809_t
Valid prediction for GeneMark_model.33839_t
Valid prediction for snap_scaffold_8-snap.477-T1
Valid prediction for GeneMark_model.33837_t
Valid prediction for GlimmerHMM_glimmerT_19795-T1
Valid prediction for GeneMark_model.33754_t
Valid prediction for GeneMark_model.33781_t
Valid prediction for snap_scaffold_8-snap.494-T1
Couldn't classify 306307, 306811
Couldn't classify 307422, 307640
Sorry, prediction pasa_asmbl_51711.p1 fails validation.
(AAC)	 GG	306307-306811	GT	AGG
(GGT)	 AG	307074-307186	GT	AGG
(AAG)	 AG	307422-307640	TT	GCT
-recovered pasa_asmbl_51711.p1, internal, 307074, 307186
Valid prediction for GeneMark_model.33857_t
Valid prediction for GeneMark_model.33830_t
Valid prediction for GeneMark_model.33851_t
Valid prediction for HiQ_model.g13243.t1
Valid prediction for snap_scaffold_8-snap.491-T1
Valid prediction for GeneMark_model.33821_t
Valid prediction for GeneMark_model.33777_t
Valid prediction for GeneMark_model.33813_t
Valid prediction for Augustus_model.g13257.t1
Couldn't classify 271685, 272026
Sorry, prediction pasa_asmbl_53579.p1 fails validation.
(TAC)	 TC	271685-272026	CC	CTC
Valid prediction for Augustus_model.g13246.t1
Valid prediction for GeneMark_model.33819_t
Valid prediction for GeneMark_model.33789_t
Valid prediction for GeneMark_model.33763_t
Valid prediction for GeneMark_model.33842_t
Valid prediction for snap_scaffold_8-snap.484-T1
Valid prediction for snap_scaffold_8-snap.506-T1
Valid prediction for GeneMark_model.33833_t
Valid prediction for Augustus_model.g13240.t1
Valid prediction for Augustus_model.g13248.t1
Valid prediction for GeneMark_model.33826_t
Valid prediction for GlimmerHMM_glimmerT_19813-T1
Valid prediction for snap_scaffold_8-snap.459-T1
Valid prediction for snap_scaffold_8-snap.505-T1
Valid prediction for GeneMark_model.33801_t
Valid prediction for snap_scaffold_8-snap.463-T1
Valid prediction for snap_scaffold_8-snap.469-T1
Valid prediction for GeneMark_model.33846_t
Valid prediction for GeneMark_model.33817_t
Valid prediction for GlimmerHMM_glimmerT_19788-T1
Valid prediction for GlimmerHMM_glimmerT_19822-T1
Valid prediction for GeneMark_model.33766_t
Valid prediction for Augustus_model.g13250.t1
Valid prediction for GeneMark_model.33807_t
Valid prediction for snap_scaffold_8-snap.497-T1
Valid prediction for snap_scaffold_8-snap.471-T1
Valid prediction for snap_scaffold_8-snap.501-T1
Valid prediction for GeneMark_model.33757_t
Valid prediction for snap_scaffold_8-snap.456-T1
Valid prediction for GlimmerHMM_glimmerT_19791-T1
Valid prediction for GeneMark_model.33831_t
Valid prediction for snap_scaffold_8-snap.500-T1
Valid prediction for GlimmerHMM_glimmerT_19816-T1
Valid prediction for GeneMark_model.33856_t
Valid prediction for GlimmerHMM_glimmerT_19806-T1
Valid prediction for GeneMark_model.33854_t
Valid prediction for GeneMark_model.33812_t
Valid prediction for Augustus_model.g13251.t1
Valid prediction for GeneMark_model.33824_t
Valid prediction for snap_scaffold_8-snap.478-T1
Valid prediction for GlimmerHMM_glimmerT_19819-T1
Valid prediction for GeneMark_model.33780_t
Valid prediction for snap_scaffold_8-snap.476-T1
Valid prediction for GlimmerHMM_glimmerT_19815-T1
Valid prediction for GeneMark_model.33844_t
Valid prediction for snap_scaffold_8-snap.479-T1
Valid prediction for GeneMark_model.33774_t
Valid prediction for GlimmerHMM_glimmerT_19798-T1
Valid prediction for GeneMark_model.33794_t
Valid prediction for GeneMark_model.33805_t
Valid prediction for GeneMark_model.33773_t
Valid prediction for GeneMark_model.33803_t
Valid prediction for Augustus_model.g13245.t1
Valid prediction for GeneMark_model.33784_t
Valid prediction for GeneMark_model.33759_t
Valid prediction for snap_scaffold_8-snap.480-T1
Valid prediction for GlimmerHMM_glimmerT_19801-T1
Couldn't classify 310651, 310984
Couldn't classify 312201, 312296
Sorry, prediction pasa_asmbl_52640.p1 fails validation.
(GGC)	 CG	310651-310984	GT	AGG
(ATC)	 AG	311803-311906	GT	GGG
(GAG)	 AG	312201-312296	CA	CCC
-recovered pasa_asmbl_52640.p1, internal, 311803, 311906
Valid prediction for GeneMark_model.33848_t
Valid prediction for snap_scaffold_8-snap.460-T1
Valid prediction for GeneMark_model.33841_t
Valid prediction for snap_scaffold_8-snap.485-T1
Valid prediction for GlimmerHMM_glimmerT_19817-T1
Valid prediction for GlimmerHMM_glimmerT_19808-T1
Valid prediction for GeneMark_model.33829_t
Valid prediction for GeneMark_model.33796_t
Valid prediction for snap_scaffold_8-snap.492-T1
Valid prediction for snap_scaffold_8-snap.499-T1
Valid prediction for GlimmerHMM_glimmerT_19787-T1
Valid prediction for GlimmerHMM_glimmerT_19812-T1
Valid prediction for GeneMark_model.33843_t
Valid prediction for GeneMark_model.33797_t
Valid prediction for GeneMark_model.33835_t
Valid prediction for GeneMark_model.33768_t
Valid prediction for GeneMark_model.33827_t
Valid prediction for snap_scaffold_8-snap.454-T1
Valid prediction for GeneMark_model.33761_t
Valid prediction for snap_scaffold_8-snap.504-T1
Valid prediction for Augustus_model.g13237.t1
Valid prediction for snap_scaffold_8-snap.496-T1
Valid prediction for GlimmerHMM_glimmerT_19803-T1
Valid prediction for GlimmerHMM_glimmerT_19826-T1
Valid prediction for GeneMark_model.33771_t
Valid prediction for snap_scaffold_8-snap.458-T1
Valid prediction for GeneMark_model.33799_t
Valid prediction for Augustus_model.g13241.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_19793-T1
Valid prediction for Augustus_model.g13255.t1
Valid prediction for GeneMark_model.33818_t
Valid prediction for GeneMark_model.33860_t
Valid prediction for GlimmerHMM_glimmerT_19802-T1
Valid prediction for snap_scaffold_8-snap.473-T1
Valid prediction for GeneMark_model.33836_t
Valid prediction for GeneMark_model.33832_t
Valid prediction for GeneMark_model.33778_t
Valid prediction for GlimmerHMM_glimmerT_19807-T1
Valid prediction for GlimmerHMM_glimmerT_19804-T1
Valid prediction for GeneMark_model.33806_t
Couldn't classify 217747, 217817
Sorry, prediction CodingQuarry_transcript_59456-T1 fails validation.
(ATG)	 CC	217480-217513	GT	TAG
(ACC)	 TG	217747-217817	GT	AGG
(CAC)	 AG	218392-218463	GT	AGG
(GAA)	 AG	218614-218634	CT	AGC
-recovered CodingQuarry_transcript_59456-T1, initial, 217480, 217513
-recovered CodingQuarry_transcript_59456-T1, terminal, 218614, 218634
-recovered CodingQuarry_transcript_59456-T1, internal, 218392, 218463
Valid prediction for GeneMark_model.33816_t
Valid prediction for snap_scaffold_8-snap.483-T1
Valid prediction for snap_scaffold_8-snap.487-T1
Valid prediction for snap_scaffold_8-snap.507-T1
Valid prediction for GeneMark_model.33767_t
Valid prediction for GeneMark_model.33858_t
Valid prediction for snap_scaffold_8-snap.503-T1
Valid prediction for GeneMark_model.33822_t
Valid prediction for snap_scaffold_8-snap.474-T1
Valid prediction for GeneMark_model.33852_t
Valid prediction for GlimmerHMM_glimmerT_19827-T1
Valid prediction for snap_scaffold_8-snap.488-T1
Valid prediction for snap_scaffold_8-snap.457-T1
Valid prediction for Augustus_model.g13258.t1
Valid prediction for Augustus_model.g13254.t1
Valid prediction for GeneMark_model.33825_t
Valid prediction for Augustus_model.g13239.t1
Valid prediction for GeneMark_model.33765_t
Valid prediction for GeneMark_model.33800_t
Valid prediction for snap_scaffold_8-snap.462-T1
Valid prediction for GeneMark_model.33802_t
Valid prediction for Augustus_model.g13247.t1
Valid prediction for GeneMark_model.33795_t
Valid prediction for GlimmerHMM_glimmerT_19800-T1
Valid prediction for GeneMark_model.33760_t
Valid prediction for GeneMark_model.33770_t
Valid prediction for GeneMark_model.33849_t
Valid prediction for Augustus_model.g13252.t1
Valid prediction for GeneMark_model.33783_t
Valid prediction for snap_scaffold_8-snap.467-T1
Valid prediction for GeneMark_model.33808_t
Valid prediction for GlimmerHMM_glimmerT_19825-T1
Valid prediction for GeneMark_model.33840_t
Valid prediction for GeneMark_model.33756_t
Valid prediction for snap_scaffold_8-snap.481-T1
Valid prediction for GeneMark_model.33782_t
Valid prediction for GeneMark_model.33815_t
Valid prediction for GeneMark_model.33775_t
Valid prediction for Augustus_model.g13242.t1
Couldn't classify 217747, 217817
Sorry, prediction CodingQuarry_transcript_59455-T1 fails validation.
(ATG)	 CC	217480-217513	GT	TAG
(ACC)	 TG	217747-217817	GT	AGG
(CAC)	 AG	218392-218463	GT	AGG
(GCT)	 AG	218846-218929	GA	GAG
-recovered CodingQuarry_transcript_59455-T1, initial, 217480, 217513
-recovered CodingQuarry_transcript_59455-T1, terminal, 218846, 218929
-recovered CodingQuarry_transcript_59455-T1, internal, 218392, 218463
Valid prediction for snap_scaffold_8-snap.482-T1
Valid prediction for GeneMark_model.33793_t
Valid prediction for GeneMark_model.33859_t
Valid prediction for GlimmerHMM_glimmerT_19824-T1
Valid prediction for Augustus_model.g13253.t1
Valid prediction for GlimmerHMM_glimmerT_19820-T1
Valid prediction for GeneMark_model.33798_t
Valid prediction for snap_scaffold_8-snap.498-T1
Valid prediction for Augustus_model.g13249.t1
Valid prediction for GlimmerHMM_glimmerT_19818-T1
Valid prediction for GeneMark_model.33787_t
Valid prediction for GeneMark_model.33788_t
Valid prediction for GlimmerHMM_glimmerT_19811-T1
Valid prediction for GeneMark_model.33850_t
Valid prediction for CodingQuarry_transcript_59454-T1
Valid prediction for GeneMark_model.33855_t
Valid prediction for snap_scaffold_8-snap.455-T1
Valid prediction for GeneMark_model.33785_t
Valid prediction for GlimmerHMM_glimmerT_19797-T1
Valid prediction for GlimmerHMM_glimmerT_19799-T1
Valid prediction for GeneMark_model.33828_t
Valid prediction for snap_scaffold_8-snap.466-T1
Valid prediction for GeneMark_model.33779_t
Valid prediction for GlimmerHMM_glimmerT_19809-T1
Valid prediction for snap_scaffold_8-snap.502-T1
Valid prediction for GeneMark_model.33804_t
Valid prediction for GeneMark_model.33853_t
Valid prediction for GlimmerHMM_glimmerT_19821-T1
Valid prediction for GeneMark_model.33753_t
Valid prediction for snap_scaffold_8-snap.475-T1
Valid prediction for GlimmerHMM_glimmerT_19794-T1
Valid prediction for GlimmerHMM_glimmerT_19805-T1
Valid prediction for GlimmerHMM_glimmerT_19823-T1
Valid prediction for GeneMark_model.33772_t
Valid prediction for snap_scaffold_8-snap.468-T1
Valid prediction for GeneMark_model.33762_t
Valid prediction for snap_scaffold_8-snap.493-T1
Valid prediction for snap_scaffold_8-snap.465-T1
Valid prediction for GlimmerHMM_glimmerT_19814-T1
Valid prediction for GeneMark_model.33838_t
Valid prediction for snap_scaffold_8-snap.490-T1
Valid prediction for GeneMark_model.33776_t
Valid prediction for GeneMark_model.33790_t
Valid prediction for GeneMark_model.33814_t
Valid prediction for snap_scaffold_8-snap.472-T1
Valid prediction for GeneMark_model.33820_t
Valid prediction for GeneMark_model.33769_t
Valid prediction for GeneMark_model.33791_t
Valid prediction for GeneMark_model.33764_t
Valid prediction for snap_scaffold_8-snap.461-T1
Valid prediction for GeneMark_model.33834_t
Valid prediction for GlimmerHMM_glimmerT_19796-T1
Valid prediction for GlimmerHMM_glimmerT_19792-T1
Valid prediction for snap_scaffold_8-snap.470-T1
Valid prediction for snap_scaffold_8-snap.486-T1
Valid prediction for HiQ_model.g13244.t1
Valid prediction for GlimmerHMM_glimmerT_19789-T1
Valid prediction for Augustus_model.g13256.t1
Valid prediction for GlimmerHMM_glimmerT_19810-T1
Valid prediction for snap_scaffold_8-snap.489-T1
Valid prediction for GeneMark_model.33758_t
Valid prediction for snap_scaffold_8-snap.495-T1
Valid prediction for snap_scaffold_8-snap.464-T1
Valid prediction for Augustus_model.g13238.t1
Valid prediction for GeneMark_model.33755_t
Valid prediction for GeneMark_model.33811_t
Valid prediction for GeneMark_model.33845_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14884, rend_intergenic: 10121  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18181, rend_intergenic: 16060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22205, rend_intergenic: 18870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32051, rend_intergenic: 22299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43055, rend_intergenic: 37770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52448, rend_intergenic: 51062  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77441, rend_intergenic: 73597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92583, rend_intergenic: 83712  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96133, rend_intergenic: 93893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121409, rend_intergenic: 110998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183126, rend_intergenic: 132767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212143, rend_intergenic: 183705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 233670, rend_intergenic: 213246  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 236207, rend_intergenic: 235234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 242089, rend_intergenic: 237239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 247859, rend_intergenic: 242945  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 264145, rend_intergenic: 247927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 276739, rend_intergenic: 264345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 292777, rend_intergenic: 276910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 312948, rend_intergenic: 293691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 319664
-exon list size: 1297


building trellis

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31.9    
32.0    
32.1    
32.2    
32.3    
32.3    
32.4    
32.5    
32.6    
32.6    
32.7    
32.8    
32.9    
32.9    
33.0    
33.1    
33.2    
33.3    
33.3    
33.4    
33.5    
33.6    
33.6    
33.7    
33.8    
33.9    
33.9    
34.0    
34.1    
34.2    
34.3    
34.3    
34.4    
34.5    
34.6    
34.6    
34.7    
34.8    
34.9    
34.9    
35.0    
35.1    
35.2    
35.3    
35.3    
35.4    
35.5    
35.6    
35.6    
35.7    
35.8    
35.9    
36.0    
36.0    
36.1    
36.2    
36.3    
36.3    
36.4    
36.5    
36.6    
36.6    
36.7    
36.8    
36.9    
37.0    
37.0    
37.1    
37.2    
37.3    
37.3    
37.4    
37.5    
37.6    
37.6    
37.7    
37.8    
37.9    
38.0    
38.0    
38.1    
38.2    
38.3    
38.3    
38.4    
38.5    
38.6    
38.6    
38.7    
38.8    
38.9    
39.0    
39.0    
39.1    
39.2    
39.3    
39.3    
39.4    
39.5    
39.6    
39.6    
39.7    
39.8    
39.9    
40.0    
40.0    
40.1    
40.2    
40.3    
40.3    
40.4    
40.5    
40.6    
40.6    
40.7    
40.8    
40.9    
41.0    
41.0    
41.1    
41.2    
41.3    
41.3    
41.4    
41.5    
41.6    
41.6    
41.7    
41.8    
41.9    
42.0    
42.0    
42.1    
42.2    
42.3    
42.3    
42.4    
42.5    
42.6    
42.6    
42.7    
42.8    
42.9    
43.0    
43.0    
43.1    
43.2    
43.3    
43.3    
43.4    
43.5    
43.6    
43.6    
43.7    
43.8    
43.9    
44.0    
44.0    
44.1    
44.2    
44.3    
44.3    
44.4    
44.5    
44.6    
44.6    
44.7    
44.8    
44.9    
45.0    
45.0    
45.1    
45.2    
45.3    
45.3    
45.4    
45.5    
45.6    
45.7    
45.7    
45.8    
45.9    
46.0    
46.0    
46.1    
46.2    
46.3    
46.3    
46.4    
46.5    
46.6    
46.7    
46.7    
46.8    
46.9    
47.0    
47.0    
47.1    
47.2    
47.3    
47.3    
47.4    
47.5    
47.6    
47.7    
47.7    
47.8    
47.9    
48.0    
48.0    
48.1    
48.2    
48.3    
48.3    
48.4    
48.5    
48.6    
48.7    
48.7    
48.8    
48.9    
49.0    
49.0    
49.1    
49.2    
49.3    
49.3    
49.4    
49.5    
49.6    
49.7    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.3    
50.4    
50.5    
50.6    
50.7    
50.7    
50.8    
50.9    
51.0    
51.0    
51.1    
51.2    
51.3    
51.3    
51.4    
51.5    
51.6    
51.7    
51.7    
51.8    
51.9    
52.0    
52.0    
52.1    
52.2    
52.3    
52.3    
52.4    
52.5    
52.6    
52.7    
52.7    
52.8    
52.9    
53.0    
53.0    
53.1    
53.2    
53.3    
53.3    
53.4    
53.5    
53.6    
53.7    
53.7    
53.8    
53.9    
54.0    
54.0    
54.1    
54.2    
54.3    
54.3    
54.4    
54.5    
54.6    
54.7    
54.7    
54.8    
54.9    
55.0    
55.0    
55.1    
55.2    
55.3    
55.4    
55.4    
55.5    
55.6    
55.7    
55.7    
55.8    
55.9    
56.0    
56.0    
56.1    
56.2    
56.3    
56.4    
56.4    
56.5    
56.6    
56.7    
56.7    
56.8    
56.9    
57.0    
57.0    
57.1    
57.2    
57.3    
57.4    
57.4    
57.5    
57.6    
57.7    
57.7    
57.8    
57.9    
58.0    
58.0    
58.1    
58.2    
58.3    
58.4    
58.4    
58.5    
58.6    
58.7    
58.7    
58.8    
58.9    
59.0    
59.0    
59.1    
59.2    
59.3    
59.4    
59.4    
59.5    
59.6    
59.7    
59.7    
59.8    
59.9    
60.0    
60.0    
60.1    
60.2    
60.3    
60.4    
60.4    
60.5    
60.6    
60.7    
60.7    
60.8    
60.9    
61.0    
61.0    
61.1    
61.2    
61.3    
61.4    
61.4    
61.5    
61.6    
61.7    
61.7    
61.8    
61.9    
62.0    
62.0    
62.1    
62.2    
62.3    
62.4    
62.4    
62.5    
62.6    
62.7    
62.7    
62.8    
62.9    
63.0    
63.0    
63.1    
63.2    
63.3    
63.4    
63.4    
63.5    
63.6    
63.7    
63.7    
63.8    
63.9    
64.0    
64.0    
64.1    
64.2    
64.3    
64.4    
64.4    
64.5    
64.6    
64.7    
64.7    
64.8    
64.9    
65.0    
65.1    
65.1    
65.2    
65.3    
65.4    
65.4    
65.5    
65.6    
65.7    
65.7    
65.8    
65.9    
66.0    
66.1    
66.1    
66.2    
66.3    
66.4    
66.4    
66.5    
66.6    
66.7    
66.7    
66.8    
66.9    
67.0    
67.1    
67.1    
67.2    
67.3    
67.4    
67.4    
67.5    
67.6    
67.7    
67.7    
67.8    
67.9    
68.0    
68.1    
68.1    
68.2    
68.3    
68.4    
68.4    
68.5    
68.6    
68.7    
68.7    
68.8    
68.9    
69.0    
69.1    
69.1    
69.2    
69.3    
69.4    
69.4    
69.5    
69.6    
69.7    
69.7    
69.8    
69.9    
70.0    
70.1    
70.1    
70.2    
70.3    
70.4    
70.4    
70.5    
70.6    
70.7    
70.7    
70.8    
70.9    
71.0    
71.1    
71.1    
71.2    
71.3    
71.4    
71.4    
71.5    
71.6    
71.7    
71.7    
71.8    
71.9    
72.0    
72.1    
72.1    
72.2    
72.3    
72.4    
72.4    
72.5    
72.6    
72.7    
72.7    
72.8    
72.9    
73.0    
73.1    
73.1    
73.2    
73.3    
73.4    
73.4    
73.5    
73.6    
73.7    
73.7    
73.8    
73.9    
74.0    
74.1    
74.1    
74.2    
74.3    
74.4    
74.4    
74.5    
74.6    
74.7    
74.7    
74.8    
74.9    
75.0    
75.1    
75.1    
75.2    
75.3    
75.4    
75.4    
75.5    
75.6    
75.7    
75.8    
75.8    
75.9    
76.0    
76.1    
76.1    
76.2    
76.3    
76.4    
76.4    
76.5    
76.6    
76.7    
76.8    
76.8    
76.9    
77.0    
77.1    
77.1    
77.2    
77.3    
77.4    
77.4    
77.5    
77.6    
77.7    
77.8    
77.8    
77.9    
78.0    
78.1    
78.1    
78.2    
78.3    
78.4    
78.4    
78.5    
78.6    
78.7    
78.8    
78.8    
78.9    
79.0    
79.1    
79.1    
79.2    
79.3    
79.4    
79.4    
79.5    
79.6    
79.7    
79.8    
79.8    
79.9    
80.0    
80.1    
80.1    
80.2    
80.3    
80.4    
80.4    
80.5    
80.6    
80.7    
80.8    
80.8    
80.9    
81.0    
81.1    
81.1    
81.2    
81.3    
81.4    
81.4    
81.5    
81.6    
81.7    
81.8    
81.8    
81.9    
82.0    
82.1    
82.1    
82.2    
82.3    
82.4    
82.4    
82.5    
82.6    
82.7    
82.8    
82.8    
82.9    
83.0    
83.1    
83.1    
83.2    
83.3    
83.4    
83.4    
83.5    
83.6    
83.7    
83.8    
83.8    
83.9    
84.0    
84.1    
84.1    
84.2    
84.3    
84.4    
84.4    
84.5    
84.6    
84.7    
84.8    
84.8    
84.9    
85.0    
85.1    
85.1    
85.2    
85.3    
85.4    
85.5    
85.5    
85.6    
85.7    
85.8    
85.8    
85.9    
86.0    
86.1    
86.1    
86.2    
86.3    
86.4    
86.5    
86.5    
86.6    
86.7    
86.8    
86.8    
86.9    
87.0    
87.1    
87.1    
87.2    
87.3    
87.4    
87.5    
87.5    
87.6    
87.7    
87.8    
87.8    
87.9    
88.0    
88.1    
88.1    
88.2    
88.3    
88.4    
88.5    
88.5    
88.6    
88.7    
88.8    
88.8    
88.9    
89.0    
89.1    
89.1    
89.2    
89.3    
89.4    
89.5    
89.5    
89.6    
89.7    
89.8    
89.8    
89.9    
90.0    
90.1    
90.1    
90.2    
90.3    
90.4    
90.5    
90.5    
90.6    
90.7    
90.8    
90.8    
90.9    
91.0    
91.1    
91.1    
91.2    
91.3    
91.4    
91.5    
91.5    
91.6    
91.7    
91.8    
91.8    
91.9    
92.0    
92.1    
92.1    
92.2    
92.3    
92.4    
92.5    
92.5    
92.6    
92.7    
92.8    
92.8    
92.9    
93.0    
93.1    
93.1    
93.2    
93.3    
93.4    
93.5    
93.5    
93.6    
93.7    
93.8    
93.8    
93.9    
94.0    
94.1    
94.1    
94.2    
94.3    
94.4    
94.5    
94.5    
94.6    
94.7    
94.8    
94.8    
94.9    
95.0    
95.1    
95.2    
95.2    
95.3    
95.4    
95.5    
95.5    
95.6    
95.7    
95.8    
95.8    
95.9    
96.0    
96.1    
96.2    
96.2    
96.3    
96.4    
96.5    
96.5    
96.6    
96.7    
96.8    
96.8    
96.9    
97.0    
97.1    
97.2    
97.2    
97.3    
97.4    
97.5    
97.5    
97.6    
97.7    
97.8    
97.8    
97.9    
98.0    
98.1    
98.2    
98.2    
98.3    
98.4    
98.5    
98.5    
98.6    
98.7    
98.8    
98.8    
98.9    
99.0    
99.1    
99.2    
99.2    
99.3    
99.4    
99.5    
99.5    
99.6    
99.7    
99.8    
99.8    
99.9    
-found 64 predictions from path traversal
Error with prediction: snap lend_intergenic: 14884, rend_intergenic: 10121  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18181, rend_intergenic: 16060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22205, rend_intergenic: 18870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32051, rend_intergenic: 22299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43055, rend_intergenic: 37770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52448, rend_intergenic: 51062  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77441, rend_intergenic: 73597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92583, rend_intergenic: 83712  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96133, rend_intergenic: 93893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121409, rend_intergenic: 110998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183126, rend_intergenic: 132767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212143, rend_intergenic: 183705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 233670, rend_intergenic: 213246  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 236207, rend_intergenic: 235234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 242089, rend_intergenic: 237239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 247859, rend_intergenic: 242945  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 264145, rend_intergenic: 247927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 276739, rend_intergenic: 264345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 292777, rend_intergenic: 276910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 312948, rend_intergenic: 293691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 24209
-exon list size: 92


building trellis

1.1    
2.1    
3.2    
4.3    
5.3    
6.4    
7.4    
8.5    
9.6    
10.6    
11.7    
12.8    
13.8    
14.9    
16.0    
17.0    
18.1    
19.1    
20.2    
21.3    
22.3    
23.4    
24.5    
25.5    
26.6    
27.7    
28.7    
29.8    
30.9    
31.9    
33.0    
34.0    
35.1    
36.2    
37.2    
38.3    
39.4    
40.4    
41.5    
42.6    
43.6    
44.7    
45.7    
46.8    
47.9    
48.9    
50.0    
51.1    
52.1    
53.2    
54.3    
55.3    
56.4    
57.4    
58.5    
59.6    
60.6    
61.7    
62.8    
63.8    
64.9    
66.0    
67.0    
68.1    
69.1    
70.2    
71.3    
72.3    
73.4    
74.5    
75.5    
76.6    
77.7    
78.7    
79.8    
80.9    
81.9    
83.0    
84.0    
85.1    
86.2    
87.2    
88.3    
89.4    
90.4    
91.5    
92.6    
93.6    
94.7    
95.7    
96.8    
97.9    
98.9    
-found 4 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support