-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_17067388-17259851

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.3178-T1
Valid prediction for GlimmerHMM_glimmerT_21675-T1
Valid prediction for GlimmerHMM_glimmerT_21666-T1
Valid prediction for GlimmerHMM_glimmerT_21660-T1
Valid prediction for Augustus_model.g14527.t1
Valid prediction for GeneMark_model.36930_t
Valid prediction for snap_scaffold_8-snap.3155-T1
Valid prediction for GeneMark_model.36932_t
Valid prediction for GlimmerHMM_glimmerT_21678-T1
Valid prediction for GeneMark_model.36940_t
Valid prediction for GeneMark_model.36956_t
Valid prediction for GeneMark_model.36944_t
Valid prediction for GeneMark_model.36966_t
Valid prediction for snap_scaffold_8-snap.3184-T1
Valid prediction for Augustus_model.g14525.t1
Valid prediction for GlimmerHMM_glimmerT_21659-T1
Valid prediction for snap_scaffold_8-snap.3176-T1
Valid prediction for Augustus_model.g14514.t1
Valid prediction for GlimmerHMM_glimmerT_21688-T1
Valid prediction for GlimmerHMM_glimmerT_21674-T1
Valid prediction for Augustus_model.g14526.t1
Valid prediction for GeneMark_model.36934_t
Valid prediction for Augustus_model.g14504.t1
Valid prediction for snap_scaffold_8-snap.3148-T1
Valid prediction for GeneMark_model.36953_t
Valid prediction for GlimmerHMM_glimmerT_21686-T1
Valid prediction for snap_scaffold_8-snap.3157-T1
Valid prediction for Augustus_model.g14522.t1
Valid prediction for GeneMark_model.36920_t
Valid prediction for GlimmerHMM_glimmerT_21672-T1
Valid prediction for GeneMark_model.36923_t
Valid prediction for Augustus_model.g14505.t1
Valid prediction for snap_scaffold_8-snap.3164-T1
Valid prediction for GeneMark_model.36931_t
Valid prediction for GeneMark_model.36936_t
Valid prediction for snap_scaffold_8-snap.3162-T1
Valid prediction for snap_scaffold_8-snap.3160-T1
Valid prediction for snap_scaffold_8-snap.3149-T1
Valid prediction for GeneMark_model.36942_t
Valid prediction for GeneMark_model.36961_t
Valid prediction for GeneMark_model.36958_t
Valid prediction for GlimmerHMM_glimmerT_21685-T1
Valid prediction for Augustus_model.g14524.t1
Valid prediction for Augustus_model.g14519.t1
Valid prediction for GlimmerHMM_glimmerT_21667-T1
Valid prediction for GeneMark_model.36949_t
Valid prediction for snap_scaffold_8-snap.3154-T1
Valid prediction for Augustus_model.g14507.t1
Valid prediction for GlimmerHMM_glimmerT_21664-T1
Valid prediction for GlimmerHMM_glimmerT_21683-T1
Valid prediction for GeneMark_model.36937_t
Valid prediction for snap_scaffold_8-snap.3181-T1
Valid prediction for GlimmerHMM_glimmerT_21677-T1
Valid prediction for Augustus_model.g14516.t1
Valid prediction for snap_scaffold_8-snap.3143-T1
Valid prediction for snap_scaffold_8-snap.3175-T1
Valid prediction for Augustus_model.g14518.t1
Valid prediction for GlimmerHMM_glimmerT_21681-T1
Valid prediction for GeneMark_model.36952_t
Valid prediction for GeneMark_model.36926_t
Valid prediction for GeneMark_model.36938_t
Valid prediction for snap_scaffold_8-snap.3185-T1
Valid prediction for snap_scaffold_8-snap.3173-T1
Valid prediction for snap_scaffold_8-snap.3159-T1
Valid prediction for snap_scaffold_8-snap.3182-T1
Valid prediction for snap_scaffold_8-snap.3169-T1
Valid prediction for GeneMark_model.36962_t
Valid prediction for snap_scaffold_8-snap.3165-T1
Valid prediction for GlimmerHMM_glimmerT_21670-T1
Valid prediction for GeneMark_model.36946_t
Valid prediction for GeneMark_model.36924_t
Valid prediction for GeneMark_model.36929_t
Valid prediction for GeneMark_model.36964_t
Valid prediction for GeneMark_model.36959_t
Valid prediction for GlimmerHMM_glimmerT_21658-T1
Valid prediction for snap_scaffold_8-snap.3158-T1
Valid prediction for GeneMark_model.36951_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_21665-T1
Valid prediction for Augustus_model.g14510.t1
Valid prediction for snap_scaffold_8-snap.3144-T1
Valid prediction for GeneMark_model.36945_t
Valid prediction for Augustus_model.g14512.t1
Valid prediction for GlimmerHMM_glimmerT_21676-T1
Valid prediction for snap_scaffold_8-snap.3141-T1
Valid prediction for Augustus_model.g14523.t1
Valid prediction for snap_scaffold_8-snap.3147-T1
Valid prediction for GeneMark_model.36925_t
Valid prediction for GeneMark_model.36939_t
Valid prediction for Augustus_model.g14511.t1
Valid prediction for snap_scaffold_8-snap.3161-T1
Valid prediction for GlimmerHMM_glimmerT_21684-T1
Valid prediction for snap_scaffold_8-snap.3177-T1
Valid prediction for GeneMark_model.36950_t
Valid prediction for snap_scaffold_8-snap.3150-T1
Valid prediction for snap_scaffold_8-snap.3170-T1
Valid prediction for GeneMark_model.36963_t
Valid prediction for GeneMark_model.36927_t
Valid prediction for GeneMark_model.36921_t
Valid prediction for Augustus_model.g14515.t1
Valid prediction for snap_scaffold_8-snap.3146-T1
Valid prediction for snap_scaffold_8-snap.3166-T1
Valid prediction for GlimmerHMM_glimmerT_21662-T1
Valid prediction for snap_scaffold_8-snap.3145-T1
Valid prediction for GlimmerHMM_glimmerT_21680-T1
Valid prediction for GlimmerHMM_glimmerT_21661-T1
Valid prediction for GeneMark_model.36933_t
Valid prediction for snap_scaffold_8-snap.3142-T1
Valid prediction for snap_scaffold_8-snap.3163-T1
Valid prediction for Augustus_model.g14513.t1
Valid prediction for snap_scaffold_8-snap.3174-T1
Valid prediction for Augustus_model.g14521.t1
Valid prediction for GlimmerHMM_glimmerT_21668-T1
Valid prediction for Augustus_model.g14520.t1
Valid prediction for GlimmerHMM_glimmerT_21682-T1
Valid prediction for GeneMark_model.36948_t
Valid prediction for snap_scaffold_8-snap.3167-T1
Valid prediction for snap_scaffold_8-snap.3153-T1
Valid prediction for GeneMark_model.36922_t
Valid prediction for snap_scaffold_8-snap.3172-T1
Valid prediction for snap_scaffold_8-snap.3171-T1
Valid prediction for Augustus_model.g14508.t1
Valid prediction for GeneMark_model.36943_t
Valid prediction for snap_scaffold_8-snap.3183-T1
Valid prediction for GeneMark_model.36957_t
Valid prediction for GeneMark_model.36965_t
Valid prediction for Augustus_model.g14509.t1
Valid prediction for snap_scaffold_8-snap.3156-T1
Valid prediction for Augustus_model.g14506.t1
Valid prediction for GeneMark_model.36947_t
Valid prediction for snap_scaffold_8-snap.3180-T1
Valid prediction for GlimmerHMM_glimmerT_21679-T1
Valid prediction for GlimmerHMM_glimmerT_21663-T1
Valid prediction for GlimmerHMM_glimmerT_21671-T1
Valid prediction for GeneMark_model.36928_t
Valid prediction for GeneMark_model.36954_t
Valid prediction for snap_scaffold_8-snap.3152-T1
Valid prediction for GlimmerHMM_glimmerT_21673-T1
Valid prediction for snap_scaffold_8-snap.3179-T1
Valid prediction for GlimmerHMM_glimmerT_21687-T1
Valid prediction for GlimmerHMM_glimmerT_21669-T1
Valid prediction for GeneMark_model.36935_t
Valid prediction for snap_scaffold_8-snap.3151-T1
Valid prediction for GeneMark_model.36941_t
Valid prediction for snap_scaffold_8-snap.3168-T1
Valid prediction for GeneMark_model.36955_t
Valid prediction for Augustus_model.g14517.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13936, rend_intergenic: 10761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25549, rend_intergenic: 23658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34228, rend_intergenic: 26394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55317, rend_intergenic: 49417  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79625, rend_intergenic: 76930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93474, rend_intergenic: 84853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135726, rend_intergenic: 127199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138523, rend_intergenic: 136007  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152626, rend_intergenic: 148916  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165182, rend_intergenic: 163538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 192464
-exon list size: 667


building trellis

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99.9    
-found 40 predictions from path traversal
Error with prediction: snap lend_intergenic: 13936, rend_intergenic: 10761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25549, rend_intergenic: 23658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34228, rend_intergenic: 26394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55317, rend_intergenic: 49417  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79625, rend_intergenic: 76930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93474, rend_intergenic: 84853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135726, rend_intergenic: 127199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138523, rend_intergenic: 136007  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152626, rend_intergenic: 148916  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165182, rend_intergenic: 163538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support