-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_16918665-17072640

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.36902_t
Valid prediction for snap_scaffold_8-snap.3130-T1
Valid prediction for GeneMark_model.36881_t
Valid prediction for snap_scaffold_8-snap.3111-T1
Valid prediction for GeneMark_model.36874_t
Valid prediction for GlimmerHMM_glimmerT_21654-T1
Valid prediction for GlimmerHMM_glimmerT_21646-T1
Valid prediction for snap_scaffold_8-snap.3136-T1
Valid prediction for GlimmerHMM_glimmerT_21642-T1
Valid prediction for snap_scaffold_8-snap.3134-T1
Valid prediction for GeneMark_model.36913_t
Valid prediction for GeneMark_model.36899_t
Valid prediction for snap_scaffold_8-snap.3109-T1
Valid prediction for GlimmerHMM_glimmerT_21633-T1
Valid prediction for GlimmerHMM_glimmerT_21637-T1
Valid prediction for GlimmerHMM_glimmerT_21640-T1
Valid prediction for snap_scaffold_8-snap.3140-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g14500.t1
Valid prediction for snap_scaffold_8-snap.3114-T1
Valid prediction for GeneMark_model.36890_t
Valid prediction for GeneMark_model.36888_t
Valid prediction for Augustus_model.g14497.t1
Valid prediction for snap_scaffold_8-snap.3138-T1
Valid prediction for GeneMark_model.36909_t
Valid prediction for Augustus_model.g14490.t1
Valid prediction for GeneMark_model.36900_t
Valid prediction for snap_scaffold_8-snap.3128-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.36880_t
Valid prediction for snap_scaffold_8-snap.3112-T1
Valid prediction for snap_scaffold_8-snap.3125-T1
Valid prediction for GlimmerHMM_glimmerT_21656-T1
Valid prediction for GlimmerHMM_glimmerT_21650-T1
Valid prediction for snap_scaffold_8-snap.3131-T1
Valid prediction for GeneMark_model.36883_t
Valid prediction for Augustus_model.g14499.t1
Valid prediction for GlimmerHMM_glimmerT_21651-T1
Valid prediction for GlimmerHMM_glimmerT_21634-T1
Valid prediction for snap_scaffold_8-snap.3117-T1
Valid prediction for snap_scaffold_8-snap.3137-T1
Valid prediction for snap_scaffold_8-snap.3133-T1
Valid prediction for GeneMark_model.36897_t
Valid prediction for Augustus_model.g14489.t1
Valid prediction for snap_scaffold_8-snap.3124-T1
Valid prediction for GeneMark_model.36885_t
Valid prediction for GeneMark_model.36915_t
Valid prediction for GeneMark_model.36911_t
Valid prediction for snap_scaffold_8-snap.3116-T1
Valid prediction for GlimmerHMM_glimmerT_21636-T1
Valid prediction for GeneMark_model.36895_t
Valid prediction for snap_scaffold_8-snap.3126-T1
Sorry, intron length (4) is less than minimum required (10)
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GeneMark_model.36907_t
Valid prediction for GeneMark_model.36916_t
Valid prediction for GlimmerHMM_glimmerT_21631-T1
Valid prediction for GlimmerHMM_glimmerT_21649-T1
Valid prediction for snap_scaffold_8-snap.3135-T1
Valid prediction for snap_scaffold_8-snap.3119-T1
Valid prediction for GlimmerHMM_glimmerT_21648-T1
Valid prediction for GlimmerHMM_glimmerT_21641-T1
Valid prediction for Augustus_model.g14494.t1
Valid prediction for GlimmerHMM_glimmerT_21653-T1
Valid prediction for GeneMark_model.36917_t
Valid prediction for GeneMark_model.36878_t
Valid prediction for Augustus_model.g14492.t1
Valid prediction for GlimmerHMM_glimmerT_21655-T1
Valid prediction for GeneMark_model.36906_t
Valid prediction for GeneMark_model.36904_t
Valid prediction for GlimmerHMM_glimmerT_21630-T1
Valid prediction for Augustus_model.g14503.t1
Valid prediction for snap_scaffold_8-snap.3110-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.3132-T1
Valid prediction for GlimmerHMM_glimmerT_21645-T1
Valid prediction for GeneMark_model.36896_t
Valid prediction for GeneMark_model.36882_t
Valid prediction for GeneMark_model.36891_t
Valid prediction for GlimmerHMM_glimmerT_21644-T1
Valid prediction for GeneMark_model.36875_t
Valid prediction for snap_scaffold_8-snap.3115-T1
Valid prediction for Augustus_model.g14487.t1
Valid prediction for GeneMark_model.36919_t
Valid prediction for Augustus_model.g14491.t1
Valid prediction for GeneMark_model.36873_t
Valid prediction for GlimmerHMM_glimmerT_21632-T1
Valid prediction for GeneMark_model.36876_t
Valid prediction for GeneMark_model.36872_t
Valid prediction for Augustus_model.g14502.t1
Valid prediction for GlimmerHMM_glimmerT_21647-T1
Valid prediction for Augustus_model.g14493.t1
Valid prediction for GeneMark_model.36879_t
Valid prediction for GeneMark_model.36914_t
Valid prediction for Augustus_model.g14495.t1
Valid prediction for GeneMark_model.36894_t
Valid prediction for snap_scaffold_8-snap.3129-T1
Valid prediction for Augustus_model.g14486.t1
Valid prediction for GeneMark_model.36887_t
Valid prediction for GlimmerHMM_glimmerT_21652-T1
Valid prediction for GeneMark_model.36877_t
Valid prediction for snap_scaffold_8-snap.3118-T1
Valid prediction for GlimmerHMM_glimmerT_21639-T1
Valid prediction for GlimmerHMM_glimmerT_21635-T1
Valid prediction for Augustus_model.g14501.t1
Valid prediction for snap_scaffold_8-snap.3120-T1
Valid prediction for GeneMark_model.36889_t
Valid prediction for GeneMark_model.36910_t
Valid prediction for snap_scaffold_8-snap.3121-T1
Valid prediction for snap_scaffold_8-snap.3113-T1
Valid prediction for GeneMark_model.36898_t
Valid prediction for GeneMark_model.36905_t
Valid prediction for GeneMark_model.36893_t
Valid prediction for GeneMark_model.36918_t
Valid prediction for snap_scaffold_8-snap.3139-T1
Valid prediction for snap_scaffold_8-snap.3122-T1
Valid prediction for snap_scaffold_8-snap.3127-T1
Valid prediction for GeneMark_model.36892_t
Valid prediction for snap_scaffold_8-snap.3107-T1
Valid prediction for GeneMark_model.36884_t
Valid prediction for GeneMark_model.36903_t
Valid prediction for GeneMark_model.36886_t
Valid prediction for GeneMark_model.36912_t
Valid prediction for Augustus_model.g14488.t1
Valid prediction for Augustus_model.g14496.t1
Valid prediction for snap_scaffold_8-snap.3108-T1
Valid prediction for GeneMark_model.36901_t
Valid prediction for snap_scaffold_8-snap.3123-T1
Valid prediction for GeneMark_model.36908_t
Valid prediction for GlimmerHMM_glimmerT_21643-T1
Valid prediction for GlimmerHMM_glimmerT_21638-T1
Valid prediction for Augustus_model.g14498.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13932, rend_intergenic: 10416  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46707, rend_intergenic: 39979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49480, rend_intergenic: 47835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52237, rend_intergenic: 49551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79433, rend_intergenic: 63583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88666, rend_intergenic: 80855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100941, rend_intergenic: 90401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101170, rend_intergenic: 100982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127201, rend_intergenic: 103045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 153976
-exon list size: 647


building trellis

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64.1    
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76.3    
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78.7    
78.9    
79.0    
79.2    
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80.0    
80.1    
80.3    
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80.6    
80.7    
80.9    
81.0    
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82.0    
82.1    
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82.7    
82.9    
83.1    
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83.8    
84.0    
84.1    
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84.9    
85.1    
85.2    
85.4    
85.5    
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85.8    
86.0    
86.1    
86.3    
86.4    
86.6    
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86.9    
87.1    
87.2    
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87.5    
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87.8    
88.0    
88.1    
88.3    
88.4    
88.6    
88.8    
88.9    
89.1    
89.2    
89.4    
89.5    
89.7    
89.8    
90.0    
90.1    
90.3    
90.4    
90.6    
90.8    
90.9    
91.1    
91.2    
91.4    
91.5    
91.7    
91.8    
92.0    
92.1    
92.3    
92.4    
92.6    
92.8    
92.9    
93.1    
93.2    
93.4    
93.5    
93.7    
93.8    
94.0    
94.1    
94.3    
94.5    
94.6    
94.8    
94.9    
95.1    
95.2    
95.4    
95.5    
95.7    
95.8    
96.0    
96.1    
96.3    
96.5    
96.6    
96.8    
96.9    
97.1    
97.2    
97.4    
97.5    
97.7    
97.8    
98.0    
98.2    
98.3    
98.5    
98.6    
98.8    
98.9    
99.1    
99.2    
99.4    
99.5    
99.7    
99.8    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 13932, rend_intergenic: 10416  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46707, rend_intergenic: 39979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49480, rend_intergenic: 47835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52237, rend_intergenic: 49551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79433, rend_intergenic: 63583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88666, rend_intergenic: 80855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100941, rend_intergenic: 90401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101170, rend_intergenic: 100982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127201, rend_intergenic: 103045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support