-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_1592041-1805620

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.33534_t
Valid prediction for GeneMark_model.33516_t
Valid prediction for GeneMark_model.33549_t
Valid prediction for GeneMark_model.33544_t
Valid prediction for GeneMark_model.33527_t
Valid prediction for snap_scaffold_8-snap.323-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_19702-T1
Valid prediction for Augustus_model.g13209.t1
Couldn't classify 133570, 133636
Couldn't classify 136322, 136473
Sorry, prediction pasa_asmbl_51698.p1 fails validation.
(CCT)	 CT	133570-133636	GT	CCG
(CCA)	 AG	135607-135873	GT	AGG
(GCT)	 AG	136322-136473	CA	TCC
-recovered pasa_asmbl_51698.p1, internal, 135607, 135873
Valid prediction for GeneMark_model.33537_t
Valid prediction for snap_scaffold_8-snap.335-T1
Valid prediction for GeneMark_model.33517_t
Valid prediction for GlimmerHMM_glimmerT_19699-T1
Valid prediction for GeneMark_model.33522_t
Valid prediction for snap_scaffold_8-snap.340-T1
Valid prediction for GeneMark_model.33523_t
Valid prediction for GlimmerHMM_glimmerT_19716-T1
Valid prediction for snap_scaffold_8-snap.317-T1
Valid prediction for GeneMark_model.33564_t
Valid prediction for snap_scaffold_8-snap.332-T1
Valid prediction for GlimmerHMM_glimmerT_19706-T1
Valid prediction for GeneMark_model.33529_t
Valid prediction for snap_scaffold_8-snap.302-T1
Valid prediction for GlimmerHMM_glimmerT_19704-T1
Valid prediction for Augustus_model.g13214.t1
Valid prediction for GlimmerHMM_glimmerT_19711-T1
Valid prediction for snap_scaffold_8-snap.303-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_8-snap.313-T1
Valid prediction for GlimmerHMM_glimmerT_19691-T1
Valid prediction for GeneMark_model.33558_t
Valid prediction for GeneMark_model.33542_t
Valid prediction for snap_scaffold_8-snap.310-T1
Valid prediction for snap_scaffold_8-snap.328-T1
Valid prediction for snap_scaffold_8-snap.309-T1
Valid prediction for GeneMark_model.33511_t
Valid prediction for GeneMark_model.33578_t
Valid prediction for snap_scaffold_8-snap.318-T1
Valid prediction for GeneMark_model.33540_t
Valid prediction for GlimmerHMM_glimmerT_19693-T1
Couldn't classify 209637, 211079
Sorry, prediction pasa_asmbl_52564.p1 fails validation.
(AGT)	 CT	209637-211079	AA	AAA
Valid prediction for GeneMark_model.33560_t
Valid prediction for GeneMark_model.33552_t
Valid prediction for snap_scaffold_8-snap.331-T1
Valid prediction for snap_scaffold_8-snap.308-T1
Valid prediction for GeneMark_model.33575_t
Valid prediction for GeneMark_model.33569_t
Valid prediction for GeneMark_model.33532_t
Valid prediction for GlimmerHMM_glimmerT_19696-T1
Valid prediction for GlimmerHMM_glimmerT_19694-T1
Valid prediction for GeneMark_model.33573_t
Valid prediction for GlimmerHMM_glimmerT_19692-T1
Valid prediction for GeneMark_model.33550_t
Valid prediction for GeneMark_model.33567_t
Valid prediction for snap_scaffold_8-snap.320-T1
Valid prediction for snap_scaffold_8-snap.307-T1
Valid prediction for Augustus_model.g13210.t1
Valid prediction for Augustus_model.g13208.t1
Valid prediction for snap_scaffold_8-snap.337-T1
Valid prediction for snap_scaffold_8-snap.301-T1
Valid prediction for GlimmerHMM_glimmerT_19713-T1
Valid prediction for GeneMark_model.33554_t
Valid prediction for snap_scaffold_8-snap.327-T1
Valid prediction for GeneMark_model.33508_t
Valid prediction for GeneMark_model.33521_t
Valid prediction for GeneMark_model.33557_t
Valid prediction for snap_scaffold_8-snap.297-T1
Valid prediction for snap_scaffold_8-snap.299-T1
Valid prediction for GeneMark_model.33571_t
Valid prediction for GeneMark_model.33520_t
Valid prediction for Augustus_model.g13206.t1
Valid prediction for GeneMark_model.33539_t
Valid prediction for snap_scaffold_8-snap.325-T1
Valid prediction for GeneMark_model.33547_t
Valid prediction for GlimmerHMM_glimmerT_19708-T1
Valid prediction for GeneMark_model.33535_t
Valid prediction for snap_scaffold_8-snap.336-T1
Valid prediction for snap_scaffold_8-snap.330-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.311-T1
Valid prediction for snap_scaffold_8-snap.321-T1
Valid prediction for GeneMark_model.33561_t
Valid prediction for GeneMark_model.33509_t
Valid prediction for GlimmerHMM_glimmerT_19700-T1
Valid prediction for GeneMark_model.33507_t
Valid prediction for GeneMark_model.33568_t
Valid prediction for GeneMark_model.33524_t
Valid prediction for GeneMark_model.33570_t
Valid prediction for GeneMark_model.33566_t
Valid prediction for GeneMark_model.33565_t
Valid prediction for GeneMark_model.33553_t
Valid prediction for GeneMark_model.33512_t
Valid prediction for GeneMark_model.33579_t
Valid prediction for snap_scaffold_8-snap.298-T1
Valid prediction for Augustus_model.g13213.t1
Valid prediction for GeneMark_model.33574_t
Valid prediction for GlimmerHMM_glimmerT_19695-T1
Valid prediction for GlimmerHMM_glimmerT_19689-T1
Valid prediction for GeneMark_model.33528_t
Valid prediction for snap_scaffold_8-snap.339-T1
Valid prediction for GeneMark_model.33518_t
Valid prediction for GlimmerHMM_glimmerT_19705-T1
Valid prediction for GeneMark_model.33555_t
Valid prediction for GeneMark_model.33548_t
Valid prediction for GeneMark_model.33526_t
Valid prediction for GlimmerHMM_glimmerT_19707-T1
Valid prediction for GeneMark_model.33572_t
Valid prediction for GlimmerHMM_glimmerT_19710-T1
Valid prediction for GlimmerHMM_glimmerT_19712-T1
Valid prediction for GeneMark_model.33577_t
Valid prediction for snap_scaffold_8-snap.304-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_8-snap.324-T1
Valid prediction for GeneMark_model.33551_t
Valid prediction for GlimmerHMM_glimmerT_19714-T1
Valid prediction for snap_scaffold_8-snap.316-T1
Valid prediction for GeneMark_model.33533_t
Valid prediction for GeneMark_model.33530_t
Valid prediction for snap_scaffold_8-snap.322-T1
Valid prediction for GlimmerHMM_glimmerT_19697-T1
Valid prediction for snap_scaffold_8-snap.306-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.33525_t
Valid prediction for GeneMark_model.33536_t
Valid prediction for GeneMark_model.33562_t
Valid prediction for GeneMark_model.33556_t
Valid prediction for GeneMark_model.33543_t
Valid prediction for GeneMark_model.33563_t
Valid prediction for GeneMark_model.33510_t
Valid prediction for GlimmerHMM_glimmerT_19703-T1
Valid prediction for GeneMark_model.33531_t
Valid prediction for GlimmerHMM_glimmerT_19701-T1
Valid prediction for GeneMark_model.33513_t
Valid prediction for GeneMark_model.33519_t
Valid prediction for GlimmerHMM_glimmerT_19709-T1
Valid prediction for snap_scaffold_8-snap.296-T1
Valid prediction for Augustus_model.g13207.t1
Valid prediction for GeneMark_model.33559_t
Valid prediction for Augustus_model.g13212.t1
Valid prediction for snap_scaffold_8-snap.326-T1
Valid prediction for snap_scaffold_8-snap.314-T1
Valid prediction for snap_scaffold_8-snap.319-T1
Valid prediction for snap_scaffold_8-snap.333-T1
Valid prediction for GeneMark_model.33546_t
Valid prediction for Augustus_model.g13211.t1
Valid prediction for GlimmerHMM_glimmerT_19690-T1
Valid prediction for GeneMark_model.33541_t
Valid prediction for GlimmerHMM_glimmerT_19698-T1
Valid prediction for GeneMark_model.33515_t
Valid prediction for snap_scaffold_8-snap.329-T1
Valid prediction for snap_scaffold_8-snap.305-T1
Valid prediction for snap_scaffold_8-snap.315-T1
Valid prediction for snap_scaffold_8-snap.300-T1
Valid prediction for snap_scaffold_8-snap.312-T1
Valid prediction for snap_scaffold_8-snap.334-T1
Valid prediction for Augustus_model.g13215.t1
Valid prediction for snap_scaffold_8-snap.338-T1
Valid prediction for GeneMark_model.33576_t
Valid prediction for snap_scaffold_8-snap.295-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GeneMark_model.33538_t
Valid prediction for GeneMark_model.33545_t
Valid prediction for GlimmerHMM_glimmerT_19715-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15361, rend_intergenic: 11271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18772, rend_intergenic: 15697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33157, rend_intergenic: 25822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34142, rend_intergenic: 33388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71952, rend_intergenic: 53819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78901, rend_intergenic: 72198  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93339, rend_intergenic: 88757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96579, rend_intergenic: 94970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104150, rend_intergenic: 97518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114244, rend_intergenic: 111777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132050, rend_intergenic: 119074  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136485, rend_intergenic: 132876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142424, rend_intergenic: 138925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161496, rend_intergenic: 144255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190259, rend_intergenic: 184918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200754, rend_intergenic: 192392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209788, rend_intergenic: 209496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 213580
-exon list size: 896


building trellis

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77.4    
77.5    
77.6    
77.7    
77.8    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.6    
99.7    
99.8    
99.9    
-found 46 predictions from path traversal
Error with prediction: snap lend_intergenic: 15361, rend_intergenic: 11271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18772, rend_intergenic: 15697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33157, rend_intergenic: 25822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34142, rend_intergenic: 33388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71952, rend_intergenic: 53819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78901, rend_intergenic: 72198  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93339, rend_intergenic: 88757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96579, rend_intergenic: 94970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104150, rend_intergenic: 97518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114244, rend_intergenic: 111777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132050, rend_intergenic: 119074  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136485, rend_intergenic: 132876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142424, rend_intergenic: 138925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161496, rend_intergenic: 144255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190259, rend_intergenic: 184918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200754, rend_intergenic: 192392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209788, rend_intergenic: 209496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support