-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_15844068-15998517

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.36668_t
Valid prediction for Augustus_model.g14373.t1
Valid prediction for GlimmerHMM_glimmerT_21488-T1
Valid prediction for GeneMark_model.36679_t
Valid prediction for GeneMark_model.36672_t
Valid prediction for snap_scaffold_8-snap.2906-T1
Valid prediction for GlimmerHMM_glimmerT_21486-T1
Valid prediction for snap_scaffold_8-snap.2898-T1
Valid prediction for GeneMark_model.36649_t
Valid prediction for GlimmerHMM_glimmerT_21481-T1
Valid prediction for GeneMark_model.36657_t
Valid prediction for GlimmerHMM_glimmerT_21477-T1
Valid prediction for GeneMark_model.36670_t
Valid prediction for GlimmerHMM_glimmerT_21482-T1
Valid prediction for GeneMark_model.36663_t
Valid prediction for snap_scaffold_8-snap.2903-T1
Valid prediction for snap_scaffold_8-snap.2913-T1
Valid prediction for GeneMark_model.36652_t
Valid prediction for snap_scaffold_8-snap.2902-T1
Valid prediction for GeneMark_model.36673_t
Valid prediction for Augustus_model.g14374.t1
Valid prediction for GeneMark_model.36661_t
Valid prediction for GeneMark_model.36675_t
Valid prediction for GeneMark_model.36677_t
Valid prediction for GeneMark_model.36650_t
Valid prediction for Augustus_model.g14371.t1
Valid prediction for Augustus_model.g14375.t1
Valid prediction for GeneMark_model.36653_t
Valid prediction for GeneMark_model.36647_t
Valid prediction for GeneMark_model.36683_t
Valid prediction for GeneMark_model.36664_t
Valid prediction for GeneMark_model.36666_t
Valid prediction for GlimmerHMM_glimmerT_21487-T1
Valid prediction for GeneMark_model.36655_t
Valid prediction for snap_scaffold_8-snap.2914-T1
Valid prediction for snap_scaffold_8-snap.2907-T1
Valid prediction for GeneMark_model.36654_t
Valid prediction for snap_scaffold_8-snap.2900-T1
Valid prediction for GeneMark_model.36669_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.36685_t
Valid prediction for GeneMark_model.36656_t
Valid prediction for Augustus_model.g14382.t1
Valid prediction for Augustus_model.g14372.t1
Valid prediction for GeneMark_model.36648_t
Valid prediction for snap_scaffold_8-snap.2918-T1
Valid prediction for GeneMark_model.36667_t
Valid prediction for snap_scaffold_8-snap.2905-T1
Valid prediction for snap_scaffold_8-snap.2915-T1
Valid prediction for snap_scaffold_8-snap.2917-T1
Valid prediction for Augustus_model.g14377.t1
Valid prediction for GlimmerHMM_glimmerT_21490-T1
Valid prediction for GlimmerHMM_glimmerT_21480-T1
Valid prediction for GeneMark_model.36674_t
Valid prediction for GeneMark_model.36680_t
Valid prediction for GeneMark_model.36671_t
Valid prediction for GeneMark_model.36665_t
Valid prediction for snap_scaffold_8-snap.2911-T1
Valid prediction for GlimmerHMM_glimmerT_21483-T1
Valid prediction for GeneMark_model.36660_t
Valid prediction for GeneMark_model.36651_t
Valid prediction for snap_scaffold_8-snap.2899-T1
Valid prediction for Augustus_model.g14381.t1
Valid prediction for GeneMark_model.36678_t
Valid prediction for Augustus_model.g14378.t1
Valid prediction for GeneMark_model.36682_t
Valid prediction for GeneMark_model.36676_t
Valid prediction for snap_scaffold_8-snap.2909-T1
Valid prediction for snap_scaffold_8-snap.2908-T1
Valid prediction for GlimmerHMM_glimmerT_21485-T1
Valid prediction for GeneMark_model.36681_t
Valid prediction for snap_scaffold_8-snap.2916-T1
Couldn't classify 25179, 25197
Couldn't classify 28592, 28865
Sorry, prediction pasa_asmbl_53350.p1 fails validation.
(GAG)	 GT	25179-25197	GT	AGG
(CCG)	 AG	26029-26085	GT	CAG
(ATT)	 AG	26888-26961	GT	AGG
(AGT)	 AG	27561-27709	GT	GGG
(AGA)	 AG	28592-28865	AA	GGA
-recovered pasa_asmbl_53350.p1, internal, 26029, 26085
-recovered pasa_asmbl_53350.p1, internal, 26888, 26961
-recovered pasa_asmbl_53350.p1, internal, 27561, 27709
Valid prediction for snap_scaffold_8-snap.2904-T1
Valid prediction for snap_scaffold_8-snap.2901-T1
Valid prediction for snap_scaffold_8-snap.2910-T1
Valid prediction for Augustus_model.g14376.t1
Valid prediction for GlimmerHMM_glimmerT_21476-T1
Valid prediction for HiQ_model.g14380.t1
Valid prediction for GeneMark_model.36659_t
Valid prediction for snap_scaffold_8-snap.2897-T1
Valid prediction for Augustus_model.g14379.t1
Valid prediction for GeneMark_model.36662_t
Valid prediction for GeneMark_model.36684_t
Valid prediction for GlimmerHMM_glimmerT_21478-T1
Valid prediction for snap_scaffold_8-snap.2912-T1
Valid prediction for GlimmerHMM_glimmerT_21484-T1
Valid prediction for GeneMark_model.36658_t
Valid prediction for GlimmerHMM_glimmerT_21479-T1
Valid prediction for GlimmerHMM_glimmerT_21489-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7898, rend_intergenic: 4565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54613, rend_intergenic: 53451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 154450
-exon list size: 407


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.5    
1.7    
2.0    
2.2    
2.4    
2.7    
2.9    
3.2    
3.4    
3.7    
3.9    
4.2    
4.4    
4.6    
4.9    
5.1    
5.4    
5.6    
5.9    
6.1    
6.4    
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6.8    
7.1    
7.3    
7.6    
7.8    
8.1    
8.3    
8.6    
8.8    
9.0    
9.3    
9.5    
9.8    
10.0    
10.3    
10.5    
10.8    
11.0    
11.2    
11.5    
11.7    
12.0    
12.2    
12.5    
12.7    
13.0    
13.2    
13.4    
13.7    
13.9    
14.2    
14.4    
14.7    
14.9    
15.2    
15.4    
15.6    
15.9    
16.1    
16.4    
16.6    
16.9    
17.1    
17.4    
17.6    
17.8    
18.1    
18.3    
18.6    
18.8    
19.1    
19.3    
19.6    
19.8    
20.0    
20.3    
20.5    
20.8    
21.0    
21.3    
21.5    
21.8    
22.0    
22.2    
22.5    
22.7    
23.0    
23.2    
23.5    
23.7    
24.0    
24.2    
24.4    
24.7    
24.9    
25.2    
25.4    
25.7    
25.9    
26.2    
26.4    
26.7    
26.9    
27.1    
27.4    
27.6    
27.9    
28.1    
28.4    
28.6    
28.9    
29.1    
29.3    
29.6    
29.8    
30.1    
30.3    
30.6    
30.8    
31.1    
31.3    
31.5    
31.8    
32.0    
32.3    
32.5    
32.8    
33.0    
33.3    
33.5    
33.7    
34.0    
34.2    
34.5    
34.7    
35.0    
35.2    
35.5    
35.7    
35.9    
36.2    
36.4    
36.7    
36.9    
37.2    
37.4    
37.7    
37.9    
38.1    
38.4    
38.6    
38.9    
39.1    
39.4    
39.6    
39.9    
40.1    
40.3    
40.6    
40.8    
41.1    
41.3    
41.6    
41.8    
42.1    
42.3    
42.5    
42.8    
43.0    
43.3    
43.5    
43.8    
44.0    
44.3    
44.5    
44.7    
45.0    
45.2    
45.5    
45.7    
46.0    
46.2    
46.5    
46.7    
46.9    
47.2    
47.4    
47.7    
47.9    
48.2    
48.4    
48.7    
48.9    
49.1    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.9    
51.1    
51.3    
51.6    
51.8    
52.1    
52.3    
52.6    
52.8    
53.1    
53.3    
53.5    
53.8    
54.0    
54.3    
54.5    
54.8    
55.0    
55.3    
55.5    
55.7    
56.0    
56.2    
56.5    
56.7    
57.0    
57.2    
57.5    
57.7    
57.9    
58.2    
58.4    
58.7    
58.9    
59.2    
59.4    
59.7    
59.9    
60.1    
60.4    
60.6    
60.9    
61.1    
61.4    
61.6    
61.9    
62.1    
62.3    
62.6    
62.8    
63.1    
63.3    
63.6    
63.8    
64.1    
64.3    
64.5    
64.8    
65.0    
65.3    
65.5    
65.8    
66.0    
66.3    
66.5    
66.7    
67.0    
67.2    
67.5    
67.7    
68.0    
68.2    
68.5    
68.7    
68.9    
69.2    
69.4    
69.7    
69.9    
70.2    
70.4    
70.7    
70.9    
71.1    
71.4    
71.6    
71.9    
72.1    
72.4    
72.6    
72.9    
73.1    
73.3    
73.6    
73.8    
74.1    
74.3    
74.6    
74.8    
75.1    
75.3    
75.6    
75.8    
76.0    
76.3    
76.5    
76.8    
77.0    
77.3    
77.5    
77.8    
78.0    
78.2    
78.5    
78.7    
79.0    
79.2    
79.5    
79.7    
80.0    
80.2    
80.4    
80.7    
80.9    
81.2    
81.4    
81.7    
81.9    
82.2    
82.4    
82.6    
82.9    
83.1    
83.4    
83.6    
83.9    
84.1    
84.4    
84.6    
84.8    
85.1    
85.3    
85.6    
85.8    
86.1    
86.3    
86.6    
86.8    
87.0    
87.3    
87.5    
87.8    
88.0    
88.3    
88.5    
88.8    
89.0    
89.2    
89.5    
89.7    
90.0    
90.2    
90.5    
90.7    
91.0    
91.2    
91.4    
91.7    
91.9    
92.2    
92.4    
92.7    
92.9    
93.2    
93.4    
93.6    
93.9    
94.1    
94.4    
94.6    
94.9    
95.1    
95.4    
95.6    
95.8    
96.1    
96.3    
96.6    
96.8    
97.1    
97.3    
97.6    
97.8    
98.0    
98.3    
98.5    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 20 predictions from path traversal
Error with prediction: snap lend_intergenic: 7898, rend_intergenic: 4565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54613, rend_intergenic: 53451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support