-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_14965126-15161827

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.36455_t
Valid prediction for GeneMark_model.36451_t
Valid prediction for snap_scaffold_8-snap.2746-T1
Valid prediction for Augustus_model.g14301.t1
Valid prediction for GeneMark_model.36471_t
Valid prediction for snap_scaffold_8-snap.2736-T1
Valid prediction for snap_scaffold_8-snap.2740-T1
Valid prediction for GlimmerHMM_glimmerT_21358-T1
Valid prediction for GeneMark_model.36469_t
Valid prediction for GlimmerHMM_glimmerT_21354-T1
Valid prediction for GeneMark_model.36463_t
Valid prediction for GlimmerHMM_glimmerT_21363-T1
Valid prediction for GeneMark_model.36465_t
Valid prediction for GeneMark_model.36459_t
Valid prediction for snap_scaffold_8-snap.2738-T1
Valid prediction for GlimmerHMM_glimmerT_21368-T1
Valid prediction for GeneMark_model.36452_t
Valid prediction for GlimmerHMM_glimmerT_21370-T1
Valid prediction for GlimmerHMM_glimmerT_21371-T1
Valid prediction for snap_scaffold_8-snap.2743-T1
Valid prediction for snap_scaffold_8-snap.2732-T1
Valid prediction for snap_scaffold_8-snap.2733-T1
Valid prediction for snap_scaffold_8-snap.2734-T1
Valid prediction for GeneMark_model.36472_t
Valid prediction for GlimmerHMM_glimmerT_21364-T1
Valid prediction for snap_scaffold_8-snap.2737-T1
Valid prediction for GeneMark_model.36448_t
Valid prediction for GeneMark_model.36476_t
Valid prediction for GeneMark_model.36468_t
Valid prediction for GeneMark_model.36458_t
Valid prediction for GeneMark_model.36456_t
Valid prediction for Augustus_model.g14300.t1
Valid prediction for snap_scaffold_8-snap.2729-T1
Valid prediction for GeneMark_model.36460_t
Valid prediction for GeneMark_model.36449_t
Valid prediction for GlimmerHMM_glimmerT_21369-T1
Valid prediction for Augustus_model.g14297.t1
Valid prediction for Augustus_model.g14295.t1
Valid prediction for snap_scaffold_8-snap.2747-T1
Valid prediction for GlimmerHMM_glimmerT_21353-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.2731-T1
Valid prediction for GeneMark_model.36470_t
Valid prediction for snap_scaffold_8-snap.2744-T1
Valid prediction for CodingQuarry_transcript_59753-T1
Valid prediction for snap_scaffold_8-snap.2728-T1
Valid prediction for HiQ_model.g14299.t1
Valid prediction for GlimmerHMM_glimmerT_21356-T1
Valid prediction for GlimmerHMM_glimmerT_21366-T1
Valid prediction for snap_scaffold_8-snap.2739-T1
Valid prediction for Augustus_model.g14298.t1
Valid prediction for GeneMark_model.36461_t
Valid prediction for Augustus_model.g14296.t1
Valid prediction for GlimmerHMM_glimmerT_21362-T1
Valid prediction for GlimmerHMM_glimmerT_21365-T1
Valid prediction for GeneMark_model.36453_t
Valid prediction for GeneMark_model.36462_t
Valid prediction for GeneMark_model.36457_t
Valid prediction for snap_scaffold_8-snap.2741-T1
Valid prediction for GlimmerHMM_glimmerT_21357-T1
Valid prediction for GlimmerHMM_glimmerT_21361-T1
Valid prediction for GeneMark_model.36450_t
Valid prediction for GeneMark_model.36466_t
Valid prediction for snap_scaffold_8-snap.2735-T1
Valid prediction for GlimmerHMM_glimmerT_21355-T1
Valid prediction for GeneMark_model.36467_t
Valid prediction for GlimmerHMM_glimmerT_21360-T1
Valid prediction for snap_scaffold_8-snap.2745-T1
Valid prediction for GeneMark_model.36473_t
Valid prediction for GlimmerHMM_glimmerT_21367-T1
Valid prediction for GeneMark_model.36474_t
Valid prediction for GeneMark_model.36454_t
Valid prediction for GlimmerHMM_glimmerT_21359-T1
Valid prediction for snap_scaffold_8-snap.2730-T1
Valid prediction for pasa_asmbl_53328.p1
Valid prediction for snap_scaffold_8-snap.2742-T1
Valid prediction for GeneMark_model.36464_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 146108, rend_intergenic: 145764  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148305, rend_intergenic: 146839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173471, rend_intergenic: 171113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 196702
-exon list size: 264


building trellis

0.4    
0.8    
1.1    
1.5    
1.9    
2.3    
2.6    
3.0    
3.4    
3.8    
4.1    
4.5    
4.9    
5.3    
5.6    
6.0    
6.4    
6.8    
7.1    
7.5    
7.9    
8.3    
8.6    
9.0    
9.4    
9.8    
10.2    
10.5    
10.9    
11.3    
11.7    
12.0    
12.4    
12.8    
13.2    
13.5    
13.9    
14.3    
14.7    
15.0    
15.4    
15.8    
16.2    
16.5    
16.9    
17.3    
17.7    
18.0    
18.4    
18.8    
19.2    
19.5    
19.9    
20.3    
20.7    
21.1    
21.4    
21.8    
22.2    
22.6    
22.9    
23.3    
23.7    
24.1    
24.4    
24.8    
25.2    
25.6    
25.9    
26.3    
26.7    
27.1    
27.4    
27.8    
28.2    
28.6    
28.9    
29.3    
29.7    
30.1    
30.5    
30.8    
31.2    
31.6    
32.0    
32.3    
32.7    
33.1    
33.5    
33.8    
34.2    
34.6    
35.0    
35.3    
35.7    
36.1    
36.5    
36.8    
37.2    
37.6    
38.0    
38.3    
38.7    
39.1    
39.5    
39.8    
40.2    
40.6    
41.0    
41.4    
41.7    
42.1    
42.5    
42.9    
43.2    
43.6    
44.0    
44.4    
44.7    
45.1    
45.5    
45.9    
46.2    
46.6    
47.0    
47.4    
47.7    
48.1    
48.5    
48.9    
49.2    
49.6    
50.0    
50.4    
50.8    
51.1    
51.5    
51.9    
52.3    
52.6    
53.0    
53.4    
53.8    
54.1    
54.5    
54.9    
55.3    
55.6    
56.0    
56.4    
56.8    
57.1    
57.5    
57.9    
58.3    
58.6    
59.0    
59.4    
59.8    
60.2    
60.5    
60.9    
61.3    
61.7    
62.0    
62.4    
62.8    
63.2    
63.5    
63.9    
64.3    
64.7    
65.0    
65.4    
65.8    
66.2    
66.5    
66.9    
67.3    
67.7    
68.0    
68.4    
68.8    
69.2    
69.5    
69.9    
70.3    
70.7    
71.1    
71.4    
71.8    
72.2    
72.6    
72.9    
73.3    
73.7    
74.1    
74.4    
74.8    
75.2    
75.6    
75.9    
76.3    
76.7    
77.1    
77.4    
77.8    
78.2    
78.6    
78.9    
79.3    
79.7    
80.1    
80.5    
80.8    
81.2    
81.6    
82.0    
82.3    
82.7    
83.1    
83.5    
83.8    
84.2    
84.6    
85.0    
85.3    
85.7    
86.1    
86.5    
86.8    
87.2    
87.6    
88.0    
88.3    
88.7    
89.1    
89.5    
89.8    
90.2    
90.6    
91.0    
91.4    
91.7    
92.1    
92.5    
92.9    
93.2    
93.6    
94.0    
94.4    
94.7    
95.1    
95.5    
95.9    
96.2    
96.6    
97.0    
97.4    
97.7    
98.1    
98.5    
98.9    
99.2    
99.6    
-found 14 predictions from path traversal
Error with prediction: snap lend_intergenic: 146108, rend_intergenic: 145764  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148305, rend_intergenic: 146839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173471, rend_intergenic: 171113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 22121
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 1 - 10659

-building DP trellis

-building trellis in range 10734 - 22121
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support