-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_14697128-14983893

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g14292.t1
Valid prediction for GeneMark_model.36442_t
Valid prediction for GlimmerHMM_glimmerT_21338-T1
Valid prediction for GeneMark_model.36448_t
Valid prediction for snap_scaffold_8-snap.2726-T1
Valid prediction for GeneMark_model.36433_t
Valid prediction for GeneMark_model.36444_t
Valid prediction for GlimmerHMM_glimmerT_21349-T1
Valid prediction for snap_scaffold_8-snap.2711-T1
Valid prediction for snap_scaffold_8-snap.2704-T1
Valid prediction for GlimmerHMM_glimmerT_21345-T1
Valid prediction for GeneMark_model.36432_t
Valid prediction for GeneMark_model.36424_t
Valid prediction for GlimmerHMM_glimmerT_21342-T1
Valid prediction for GlimmerHMM_glimmerT_21343-T1
Valid prediction for snap_scaffold_8-snap.2714-T1
Valid prediction for GeneMark_model.36428_t
Valid prediction for GeneMark_model.36427_t
Valid prediction for GeneMark_model.36417_t
Valid prediction for GeneMark_model.36421_t
Valid prediction for snap_scaffold_8-snap.2715-T1
Valid prediction for GeneMark_model.36434_t
Valid prediction for GeneMark_model.36436_t
Valid prediction for GeneMark_model.36415_t
Valid prediction for GeneMark_model.36416_t
Valid prediction for GeneMark_model.36430_t
Valid prediction for GlimmerHMM_glimmerT_21336-T1
Valid prediction for GlimmerHMM_glimmerT_21352-T1
Valid prediction for GeneMark_model.36419_t
Valid prediction for snap_scaffold_8-snap.2727-T1
Valid prediction for GlimmerHMM_glimmerT_21341-T1
Valid prediction for GeneMark_model.36431_t
Valid prediction for GlimmerHMM_glimmerT_21344-T1
Valid prediction for snap_scaffold_8-snap.2724-T1
Valid prediction for GeneMark_model.36438_t
Valid prediction for snap_scaffold_8-snap.2723-T1
Valid prediction for snap_scaffold_8-snap.2703-T1
Valid prediction for GeneMark_model.36429_t
Valid prediction for GeneMark_model.36440_t
Valid prediction for GlimmerHMM_glimmerT_21334-T1
Valid prediction for GeneMark_model.36425_t
Valid prediction for snap_scaffold_8-snap.2718-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_21333-T1
Valid prediction for snap_scaffold_8-snap.2722-T1
Valid prediction for snap_scaffold_8-snap.2706-T1
Valid prediction for GeneMark_model.36446_t
Valid prediction for GeneMark_model.36423_t
Couldn't classify 47591, 47707
Sorry, prediction pasa_asmbl_53326.p1 fails validation.
(ATG)	 AC	46316-46448	GT	TGG
(GGG)	 AG	47248-47369	GT	AAG
(CTG)	 AG	47591-47707	GG	GAG
-recovered pasa_asmbl_53326.p1, initial, 46316, 46448
-recovered pasa_asmbl_53326.p1, internal, 47248, 47369
Valid prediction for GlimmerHMM_glimmerT_21335-T1
Valid prediction for Augustus_model.g14293.t1
Valid prediction for GlimmerHMM_glimmerT_21340-T1
Valid prediction for GlimmerHMM_glimmerT_21339-T1
Valid prediction for snap_scaffold_8-snap.2713-T1
Valid prediction for snap_scaffold_8-snap.2709-T1
Valid prediction for snap_scaffold_8-snap.2717-T1
Valid prediction for snap_scaffold_8-snap.2707-T1
Valid prediction for GlimmerHMM_glimmerT_21348-T1
Valid prediction for Augustus_model.g14290.t1
Valid prediction for GeneMark_model.36445_t
Valid prediction for snap_scaffold_8-snap.2710-T1
Valid prediction for Augustus_model.g14289.t1
Couldn't classify 51136, 51361
Sorry, prediction pasa_asmbl_53325.p1 fails validation.
(CGG)	 CC	51136-51361	GT	GGG
(CGA)	 AG	51907-52403	CA	AAC
-recovered pasa_asmbl_53325.p1, terminal, 51907, 52403
Valid prediction for GlimmerHMM_glimmerT_21350-T1
Valid prediction for GeneMark_model.36435_t
Valid prediction for snap_scaffold_8-snap.2716-T1
Couldn't classify 40607, 40691
Couldn't classify 45833, 45874
Sorry, prediction pasa_asmbl_53611.p1 fails validation.
(GGT)	 GG	40607-40691	GT	GAG
(GTG)	 AG	42728-42915	GT	AGG
(CCC)	 AG	45833-45874	GA	TGG
-recovered pasa_asmbl_53611.p1, internal, 42728, 42915
Valid prediction for snap_scaffold_8-snap.2708-T1
Valid prediction for snap_scaffold_8-snap.2719-T1
Valid prediction for GlimmerHMM_glimmerT_21337-T1
Valid prediction for GeneMark_model.36414_t
Valid prediction for snap_scaffold_8-snap.2712-T1
Valid prediction for snap_scaffold_8-snap.2721-T1
Valid prediction for snap_scaffold_8-snap.2725-T1
Valid prediction for GlimmerHMM_glimmerT_21346-T1
Valid prediction for GeneMark_model.36441_t
Valid prediction for GlimmerHMM_glimmerT_21347-T1
Valid prediction for Augustus_model.g14291.t1
Valid prediction for GlimmerHMM_glimmerT_21351-T1
Valid prediction for GeneMark_model.36437_t
Valid prediction for Augustus_model.g14294.t1
Valid prediction for GeneMark_model.36439_t
Valid prediction for GeneMark_model.36418_t
Valid prediction for GeneMark_model.36420_t
Valid prediction for GeneMark_model.36447_t
Valid prediction for GeneMark_model.36426_t
Valid prediction for GeneMark_model.36443_t
Valid prediction for snap_scaffold_8-snap.2705-T1
Valid prediction for snap_scaffold_8-snap.2702-T1
Valid prediction for snap_scaffold_8-snap.2720-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 116239, rend_intergenic: 113719  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 244028, rend_intergenic: 237264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 247339, rend_intergenic: 245631  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 286766
-exon list size: 290


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.1    
2.4    
2.7    
3.1    
3.4    
3.8    
4.1    
4.5    
4.8    
5.1    
5.5    
5.8    
6.2    
6.5    
6.8    
7.2    
7.5    
7.9    
8.2    
8.6    
8.9    
9.2    
9.6    
9.9    
10.3    
10.6    
11.0    
11.3    
11.6    
12.0    
12.3    
12.7    
13.0    
13.4    
13.7    
14.0    
14.4    
14.7    
15.1    
15.4    
15.8    
16.1    
16.4    
16.8    
17.1    
17.5    
17.8    
18.2    
18.5    
18.8    
19.2    
19.5    
19.9    
20.2    
20.5    
20.9    
21.2    
21.6    
21.9    
22.3    
22.6    
22.9    
23.3    
23.6    
24.0    
24.3    
24.7    
25.0    
25.3    
25.7    
26.0    
26.4    
26.7    
27.1    
27.4    
27.7    
28.1    
28.4    
28.8    
29.1    
29.5    
29.8    
30.1    
30.5    
30.8    
31.2    
31.5    
31.8    
32.2    
32.5    
32.9    
33.2    
33.6    
33.9    
34.2    
34.6    
34.9    
35.3    
35.6    
36.0    
36.3    
36.6    
37.0    
37.3    
37.7    
38.0    
38.4    
38.7    
39.0    
39.4    
39.7    
40.1    
40.4    
40.8    
41.1    
41.4    
41.8    
42.1    
42.5    
42.8    
43.2    
43.5    
43.8    
44.2    
44.5    
44.9    
45.2    
45.5    
45.9    
46.2    
46.6    
46.9    
47.3    
47.6    
47.9    
48.3    
48.6    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.4    
51.7    
52.1    
52.4    
52.7    
53.1    
53.4    
53.8    
54.1    
54.5    
54.8    
55.1    
55.5    
55.8    
56.2    
56.5    
56.8    
57.2    
57.5    
57.9    
58.2    
58.6    
58.9    
59.2    
59.6    
59.9    
60.3    
60.6    
61.0    
61.3    
61.6    
62.0    
62.3    
62.7    
63.0    
63.4    
63.7    
64.0    
64.4    
64.7    
65.1    
65.4    
65.8    
66.1    
66.4    
66.8    
67.1    
67.5    
67.8    
68.2    
68.5    
68.8    
69.2    
69.5    
69.9    
70.2    
70.5    
70.9    
71.2    
71.6    
71.9    
72.3    
72.6    
72.9    
73.3    
73.6    
74.0    
74.3    
74.7    
75.0    
75.3    
75.7    
76.0    
76.4    
76.7    
77.1    
77.4    
77.7    
78.1    
78.4    
78.8    
79.1    
79.5    
79.8    
80.1    
80.5    
80.8    
81.2    
81.5    
81.8    
82.2    
82.5    
82.9    
83.2    
83.6    
83.9    
84.2    
84.6    
84.9    
85.3    
85.6    
86.0    
86.3    
86.6    
87.0    
87.3    
87.7    
88.0    
88.4    
88.7    
89.0    
89.4    
89.7    
90.1    
90.4    
90.8    
91.1    
91.4    
91.8    
92.1    
92.5    
92.8    
93.2    
93.5    
93.8    
94.2    
94.5    
94.9    
95.2    
95.5    
95.9    
96.2    
96.6    
96.9    
97.3    
97.6    
97.9    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 16 predictions from path traversal
Error with prediction: snap lend_intergenic: 116239, rend_intergenic: 113719  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 244028, rend_intergenic: 237264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 247339, rend_intergenic: 245631  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support
	-no exons in range 1 - 18174

-building DP trellis

-building trellis in range 265161 - 286766
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 265749 - 286766
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 267388 - 286766
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 267890 - 286766
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 267999 - 286766
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 267999 - 278657
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support