-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_14053742-14307949

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g14253.t1
Valid prediction for GeneMark_model.36273_t
Valid prediction for snap_scaffold_8-snap.2602-T1
Valid prediction for GeneMark_model.36307_t
Valid prediction for snap_scaffold_8-snap.2569-T1
Valid prediction for GeneMark_model.36281_t
Valid prediction for GlimmerHMM_glimmerT_21269-T1
Valid prediction for snap_scaffold_8-snap.2598-T1
Valid prediction for Augustus_model.g14248.t1
Valid prediction for snap_scaffold_8-snap.2574-T1
Valid prediction for GlimmerHMM_glimmerT_21248-T1
Valid prediction for snap_scaffold_8-snap.2599-T1
Valid prediction for CodingQuarry_transcript_59745-T1
Valid prediction for GlimmerHMM_glimmerT_21255-T1
Valid prediction for GlimmerHMM_glimmerT_21260-T1
Valid prediction for GeneMark_model.36269_t
Valid prediction for HiQ_model.g14251.t1
Valid prediction for GeneMark_model.36291_t
Valid prediction for GeneMark_model.36265_t
Valid prediction for GeneMark_model.36288_t
Valid prediction for snap_scaffold_8-snap.2607-T1
Valid prediction for GlimmerHMM_glimmerT_21271-T1
Valid prediction for GeneMark_model.36303_t
Valid prediction for pasa_asmbl_52351.p1
Valid prediction for GeneMark_model.36292_t
Valid prediction for GeneMark_model.36283_t
Valid prediction for GlimmerHMM_glimmerT_21251-T1
Valid prediction for GeneMark_model.36267_t
Valid prediction for GeneMark_model.36279_t
Valid prediction for snap_scaffold_8-snap.2570-T1
Valid prediction for GeneMark_model.36294_t
Valid prediction for GeneMark_model.36302_t
Valid prediction for snap_scaffold_8-snap.2601-T1
Valid prediction for snap_scaffold_8-snap.2605-T1
Valid prediction for GlimmerHMM_glimmerT_21249-T1
Valid prediction for CodingQuarry_transcript_59739-T1
Valid prediction for snap_scaffold_8-snap.2604-T1
Valid prediction for GeneMark_model.36274_t
Valid prediction for snap_scaffold_8-snap.2579-T1
Valid prediction for GeneMark_model.36311_t
Valid prediction for GlimmerHMM_glimmerT_21276-T1
Valid prediction for GlimmerHMM_glimmerT_21257-T1
Valid prediction for snap_scaffold_8-snap.2586-T1
Valid prediction for Augustus_model.g14247.t1
Valid prediction for GlimmerHMM_glimmerT_21247-T1
Valid prediction for GeneMark_model.36277_t
Valid prediction for Augustus_model.g14259.t1
Valid prediction for GeneMark_model.36271_t
Valid prediction for CodingQuarry_transcript_59741-T1
Valid prediction for snap_scaffold_8-snap.2575-T1
Valid prediction for GeneMark_model.36276_t
Valid prediction for GeneMark_model.36305_t
Valid prediction for GlimmerHMM_glimmerT_21253-T1
Valid prediction for pasa_asmbl_52353.p1
Valid prediction for GeneMark_model.36299_t
Valid prediction for HiQ_model.g14260.t1
Valid prediction for GeneMark_model.36285_t
Valid prediction for snap_scaffold_8-snap.2571-T1
Valid prediction for GlimmerHMM_glimmerT_21275-T1
Valid prediction for Augustus_model.g14254.t1
Valid prediction for snap_scaffold_8-snap.2593-T1
Valid prediction for pasa_asmbl_52356.p1
Valid prediction for GlimmerHMM_glimmerT_21273-T1
Valid prediction for snap_scaffold_8-snap.2577-T1
Valid prediction for GlimmerHMM_glimmerT_21259-T1
Valid prediction for snap_scaffold_8-snap.2591-T1
Valid prediction for snap_scaffold_8-snap.2580-T1
Valid prediction for snap_scaffold_8-snap.2572-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.2581-T1
Valid prediction for GeneMark_model.36282_t
Valid prediction for GlimmerHMM_glimmerT_21268-T1
Valid prediction for GeneMark_model.36280_t
Valid prediction for pasa_asmbl_53302.p1
Valid prediction for GeneMark_model.36268_t
Valid prediction for GeneMark_model.36290_t
Valid prediction for GlimmerHMM_glimmerT_21261-T1
Valid prediction for GlimmerHMM_glimmerT_21264-T1
Valid prediction for GeneMark_model.36301_t
Valid prediction for GeneMark_model.36289_t
Valid prediction for snap_scaffold_8-snap.2590-T1
Valid prediction for snap_scaffold_8-snap.2596-T1
Valid prediction for GeneMark_model.36293_t
Valid prediction for GlimmerHMM_glimmerT_21258-T1
Valid prediction for GeneMark_model.36275_t
Valid prediction for GlimmerHMM_glimmerT_21267-T1
Valid prediction for GeneMark_model.36295_t
Valid prediction for GlimmerHMM_glimmerT_21252-T1
Valid prediction for snap_scaffold_8-snap.2589-T1
Valid prediction for GeneMark_model.36298_t
Valid prediction for snap_scaffold_8-snap.2587-T1
Valid prediction for GeneMark_model.36309_t
Valid prediction for GlimmerHMM_glimmerT_21266-T1
Valid prediction for GeneMark_model.36272_t
Valid prediction for GlimmerHMM_glimmerT_21262-T1
Valid prediction for GlimmerHMM_glimmerT_21274-T1
Valid prediction for CodingQuarry_transcript_59740-T1
Valid prediction for snap_scaffold_8-snap.2592-T1
Valid prediction for GlimmerHMM_glimmerT_21254-T1
Valid prediction for Augustus_model.g14257.t1
Valid prediction for GlimmerHMM_glimmerT_21272-T1
Valid prediction for HiQ_model.g14256.t1
Valid prediction for CodingQuarry_transcript_59743-T1
Valid prediction for CodingQuarry_transcript_59742-T1
Valid prediction for GeneMark_model.36300_t
Valid prediction for snap_scaffold_8-snap.2585-T1
Valid prediction for GeneMark_model.36286_t
Valid prediction for Augustus_model.g14249.t1
Valid prediction for CodingQuarry_transcript_59744-T1
Valid prediction for snap_scaffold_8-snap.2582-T1
Valid prediction for snap_scaffold_8-snap.2597-T1
Valid prediction for GeneMark_model.36266_t
Valid prediction for pasa_asmbl_53304.p1
Valid prediction for snap_scaffold_8-snap.2578-T1
Valid prediction for GeneMark_model.36296_t
Valid prediction for Augustus_model.g14261.t1
Valid prediction for GlimmerHMM_glimmerT_21256-T1
Valid prediction for snap_scaffold_8-snap.2600-T1
Valid prediction for GeneMark_model.36278_t
Valid prediction for snap_scaffold_8-snap.2588-T1
Valid prediction for snap_scaffold_8-snap.2576-T1
Valid prediction for GeneMark_model.36308_t
Valid prediction for snap_scaffold_8-snap.2568-T1
Valid prediction for GeneMark_model.36304_t
Valid prediction for HiQ_model.g14252.t1
Valid prediction for GeneMark_model.36310_t
Valid prediction for snap_scaffold_8-snap.2567-T1
Valid prediction for snap_scaffold_8-snap.2584-T1
Valid prediction for snap_scaffold_8-snap.2606-T1
Valid prediction for snap_scaffold_8-snap.2595-T1
Valid prediction for GeneMark_model.36284_t
Valid prediction for GeneMark_model.36312_t
Valid prediction for GeneMark_model.36297_t
Valid prediction for GeneMark_model.36287_t
Valid prediction for GeneMark_model.36270_t
Valid prediction for GlimmerHMM_glimmerT_21265-T1
Valid prediction for GlimmerHMM_glimmerT_21263-T1
Valid prediction for GlimmerHMM_glimmerT_21270-T1
Valid prediction for GeneMark_model.36306_t
Valid prediction for snap_scaffold_8-snap.2594-T1
Valid prediction for snap_scaffold_8-snap.2583-T1
Valid prediction for Augustus_model.g14250.t1
Valid prediction for Augustus_model.g14258.t1
Valid prediction for Augustus_model.g14255.t1
Valid prediction for snap_scaffold_8-snap.2603-T1
Valid prediction for GlimmerHMM_glimmerT_21250-T1
Valid prediction for snap_scaffold_8-snap.2573-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 43721, rend_intergenic: 12264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50125, rend_intergenic: 45302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53647, rend_intergenic: 50848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110449, rend_intergenic: 109322  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133539, rend_intergenic: 127998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175802, rend_intergenic: 173060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 254208
-exon list size: 521


building trellis

0.2    
0.4    
0.6    
0.8    
1.0    
1.1    
1.3    
1.5    
1.7    
1.9    
2.1    
2.3    
2.5    
2.7    
2.9    
3.1    
3.3    
3.4    
3.6    
3.8    
4.0    
4.2    
4.4    
4.6    
4.8    
5.0    
5.2    
5.4    
5.5    
5.7    
5.9    
6.1    
6.3    
6.5    
6.7    
6.9    
7.1    
7.3    
7.5    
7.6    
7.8    
8.0    
8.2    
8.4    
8.6    
8.8    
9.0    
9.2    
9.4    
9.6    
9.8    
9.9    
10.1    
10.3    
10.5    
10.7    
10.9    
11.1    
11.3    
11.5    
11.7    
11.9    
12.0    
12.2    
12.4    
12.6    
12.8    
13.0    
13.2    
13.4    
13.6    
13.8    
14.0    
14.1    
14.3    
14.5    
14.7    
14.9    
15.1    
15.3    
15.5    
15.7    
15.9    
16.1    
16.3    
16.4    
16.6    
16.8    
17.0    
17.2    
17.4    
17.6    
17.8    
18.0    
18.2    
18.4    
18.5    
18.7    
18.9    
19.1    
19.3    
19.5    
19.7    
19.9    
20.1    
20.3    
20.5    
20.7    
20.8    
21.0    
21.2    
21.4    
21.6    
21.8    
22.0    
22.2    
22.4    
22.6    
22.8    
22.9    
23.1    
23.3    
23.5    
23.7    
23.9    
24.1    
24.3    
24.5    
24.7    
24.9    
25.0    
25.2    
25.4    
25.6    
25.8    
26.0    
26.2    
26.4    
26.6    
26.8    
27.0    
27.2    
27.3    
27.5    
27.7    
27.9    
28.1    
28.3    
28.5    
28.7    
28.9    
29.1    
29.3    
29.4    
29.6    
29.8    
30.0    
30.2    
30.4    
30.6    
30.8    
31.0    
31.2    
31.4    
31.5    
31.7    
31.9    
32.1    
32.3    
32.5    
32.7    
32.9    
33.1    
33.3    
33.5    
33.7    
33.8    
34.0    
34.2    
34.4    
34.6    
34.8    
35.0    
35.2    
35.4    
35.6    
35.8    
35.9    
36.1    
36.3    
36.5    
36.7    
36.9    
37.1    
37.3    
37.5    
37.7    
37.9    
38.0    
38.2    
38.4    
38.6    
38.8    
39.0    
39.2    
39.4    
39.6    
39.8    
40.0    
40.2    
40.3    
40.5    
40.7    
40.9    
41.1    
41.3    
41.5    
41.7    
41.9    
42.1    
42.3    
42.4    
42.6    
42.8    
43.0    
43.2    
43.4    
43.6    
43.8    
44.0    
44.2    
44.4    
44.6    
44.7    
44.9    
45.1    
45.3    
45.5    
45.7    
45.9    
46.1    
46.3    
46.5    
46.7    
46.8    
47.0    
47.2    
47.4    
47.6    
47.8    
48.0    
48.2    
48.4    
48.6    
48.8    
48.9    
49.1    
49.3    
49.5    
49.7    
49.9    
50.1    
50.3    
50.5    
50.7    
50.9    
51.1    
51.2    
51.4    
51.6    
51.8    
52.0    
52.2    
52.4    
52.6    
52.8    
53.0    
53.2    
53.3    
53.5    
53.7    
53.9    
54.1    
54.3    
54.5    
54.7    
54.9    
55.1    
55.3    
55.4    
55.6    
55.8    
56.0    
56.2    
56.4    
56.6    
56.8    
57.0    
57.2    
57.4    
57.6    
57.7    
57.9    
58.1    
58.3    
58.5    
58.7    
58.9    
59.1    
59.3    
59.5    
59.7    
59.8    
60.0    
60.2    
60.4    
60.6    
60.8    
61.0    
61.2    
61.4    
61.6    
61.8    
62.0    
62.1    
62.3    
62.5    
62.7    
62.9    
63.1    
63.3    
63.5    
63.7    
63.9    
64.1    
64.2    
64.4    
64.6    
64.8    
65.0    
65.2    
65.4    
65.6    
65.8    
66.0    
66.2    
66.3    
66.5    
66.7    
66.9    
67.1    
67.3    
67.5    
67.7    
67.9    
68.1    
68.3    
68.5    
68.6    
68.8    
69.0    
69.2    
69.4    
69.6    
69.8    
70.0    
70.2    
70.4    
70.6    
70.7    
70.9    
71.1    
71.3    
71.5    
71.7    
71.9    
72.1    
72.3    
72.5    
72.7    
72.8    
73.0    
73.2    
73.4    
73.6    
73.8    
74.0    
74.2    
74.4    
74.6    
74.8    
75.0    
75.1    
75.3    
75.5    
75.7    
75.9    
76.1    
76.3    
76.5    
76.7    
76.9    
77.1    
77.2    
77.4    
77.6    
77.8    
78.0    
78.2    
78.4    
78.6    
78.8    
79.0    
79.2    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.7    
80.9    
81.1    
81.3    
81.5    
81.6    
81.8    
82.0    
82.2    
82.4    
82.6    
82.8    
83.0    
83.2    
83.4    
83.6    
83.7    
83.9    
84.1    
84.3    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.0    
86.2    
86.4    
86.6    
86.8    
87.0    
87.2    
87.4    
87.6    
87.8    
88.0    
88.1    
88.3    
88.5    
88.7    
88.9    
89.1    
89.3    
89.5    
89.7    
89.9    
90.1    
90.2    
90.4    
90.6    
90.8    
91.0    
91.2    
91.4    
91.6    
91.8    
92.0    
92.2    
92.4    
92.5    
92.7    
92.9    
93.1    
93.3    
93.5    
93.7    
93.9    
94.1    
94.3    
94.5    
94.6    
94.8    
95.0    
95.2    
95.4    
95.6    
95.8    
96.0    
96.2    
96.4    
96.6    
96.7    
96.9    
97.1    
97.3    
97.5    
97.7    
97.9    
98.1    
98.3    
98.5    
98.7    
98.9    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 43721, rend_intergenic: 12264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50125, rend_intergenic: 45302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53647, rend_intergenic: 50848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110449, rend_intergenic: 109322  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133539, rend_intergenic: 127998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175802, rend_intergenic: 173060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10732
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 236375 - 254208
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support