-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_13852766-14060032

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.36225_t
Valid prediction for GeneMark_model.36254_t
Valid prediction for Augustus_model.g14244.t1
Valid prediction for snap_scaffold_8-snap.2532-T1
Valid prediction for GeneMark_model.36256_t
Valid prediction for Augustus_model.g14243.t1
Valid prediction for Augustus_model.g14240.t1
Valid prediction for GlimmerHMM_glimmerT_21235-T1
Valid prediction for GeneMark_model.36242_t
Valid prediction for GeneMark_model.36233_t
Valid prediction for GeneMark_model.36261_t
Valid prediction for GlimmerHMM_glimmerT_21229-T1
Valid prediction for snap_scaffold_8-snap.2563-T1
Valid prediction for snap_scaffold_8-snap.2531-T1
Valid prediction for GeneMark_model.36229_t
Valid prediction for snap_scaffold_8-snap.2544-T1
Valid prediction for GeneMark_model.36246_t
Valid prediction for snap_scaffold_8-snap.2539-T1
Valid prediction for snap_scaffold_8-snap.2556-T1
Valid prediction for GeneMark_model.36252_t
Valid prediction for snap_scaffold_8-snap.2551-T1
Valid prediction for GeneMark_model.36222_t
Valid prediction for GlimmerHMM_glimmerT_21241-T1
Valid prediction for GeneMark_model.36220_t
Valid prediction for GeneMark_model.36224_t
Valid prediction for GeneMark_model.36240_t
Valid prediction for snap_scaffold_8-snap.2559-T1
Valid prediction for GeneMark_model.36265_t
Valid prediction for GlimmerHMM_glimmerT_21238-T1
Valid prediction for GlimmerHMM_glimmerT_21233-T1
Valid prediction for GeneMark_model.36228_t
Valid prediction for GeneMark_model.36243_t
Valid prediction for GlimmerHMM_glimmerT_21230-T1
Valid prediction for GeneMark_model.36251_t
Valid prediction for GeneMark_model.36263_t
Valid prediction for GlimmerHMM_glimmerT_21240-T1
Valid prediction for GeneMark_model.36259_t
Valid prediction for snap_scaffold_8-snap.2549-T1
Valid prediction for snap_scaffold_8-snap.2553-T1
Valid prediction for snap_scaffold_8-snap.2560-T1
Valid prediction for snap_scaffold_8-snap.2534-T1
Valid prediction for GlimmerHMM_glimmerT_21225-T1
Valid prediction for snap_scaffold_8-snap.2543-T1
Valid prediction for GeneMark_model.36248_t
Valid prediction for GeneMark_model.36234_t
Valid prediction for GlimmerHMM_glimmerT_21243-T1
Valid prediction for GeneMark_model.36226_t
Valid prediction for snap_scaffold_8-snap.2537-T1
Valid prediction for snap_scaffold_8-snap.2558-T1
Valid prediction for snap_scaffold_8-snap.2538-T1
Valid prediction for GlimmerHMM_glimmerT_21231-T1
Valid prediction for GeneMark_model.36236_t
Valid prediction for snap_scaffold_8-snap.2530-T1
Valid prediction for GeneMark_model.36249_t
Valid prediction for GlimmerHMM_glimmerT_21226-T1
Valid prediction for snap_scaffold_8-snap.2557-T1
Valid prediction for GlimmerHMM_glimmerT_21234-T1
Valid prediction for GlimmerHMM_glimmerT_21237-T1
Valid prediction for snap_scaffold_8-snap.2565-T1
Valid prediction for snap_scaffold_8-snap.2541-T1
Valid prediction for GlimmerHMM_glimmerT_21239-T1
Valid prediction for GlimmerHMM_glimmerT_21242-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.36239_t
Valid prediction for GeneMark_model.36258_t
Valid prediction for snap_scaffold_8-snap.2545-T1
Valid prediction for GlimmerHMM_glimmerT_21228-T1
Valid prediction for Augustus_model.g14241.t1
Valid prediction for GlimmerHMM_glimmerT_21236-T1
Valid prediction for GlimmerHMM_glimmerT_21227-T1
Valid prediction for GeneMark_model.36232_t
Valid prediction for snap_scaffold_8-snap.2566-T1
Valid prediction for GeneMark_model.36230_t
Valid prediction for snap_scaffold_8-snap.2561-T1
Valid prediction for snap_scaffold_8-snap.2562-T1
Valid prediction for GlimmerHMM_glimmerT_21245-T1
Valid prediction for snap_scaffold_8-snap.2548-T1
Valid prediction for GeneMark_model.36244_t
Valid prediction for GeneMark_model.36257_t
Valid prediction for GeneMark_model.36245_t
Valid prediction for snap_scaffold_8-snap.2546-T1
Valid prediction for Augustus_model.g14245.t1
Valid prediction for GeneMark_model.36241_t
Valid prediction for snap_scaffold_8-snap.2542-T1
Valid prediction for snap_scaffold_8-snap.2536-T1
Valid prediction for GeneMark_model.36262_t
Valid prediction for snap_scaffold_8-snap.2550-T1
Valid prediction for GeneMark_model.36231_t
Valid prediction for snap_scaffold_8-snap.2554-T1
Valid prediction for GeneMark_model.36237_t
Valid prediction for snap_scaffold_8-snap.2540-T1
Valid prediction for GeneMark_model.36223_t
Valid prediction for GeneMark_model.36238_t
Valid prediction for snap_scaffold_8-snap.2529-T1
Valid prediction for snap_scaffold_8-snap.2533-T1
Valid prediction for GeneMark_model.36260_t
Valid prediction for GeneMark_model.36253_t
Valid prediction for Augustus_model.g14239.t1
Valid prediction for GeneMark_model.36221_t
Valid prediction for GeneMark_model.36250_t
Valid prediction for Augustus_model.g14242.t1
Valid prediction for snap_scaffold_8-snap.2535-T1
Valid prediction for GeneMark_model.36235_t
Valid prediction for Augustus_model.g14246.t1
Valid prediction for GlimmerHMM_glimmerT_21232-T1
Valid prediction for GeneMark_model.36247_t
Valid prediction for GeneMark_model.36227_t
Valid prediction for snap_scaffold_8-snap.2564-T1
Valid prediction for snap_scaffold_8-snap.2555-T1
Valid prediction for GlimmerHMM_glimmerT_21244-T1
Valid prediction for snap_scaffold_8-snap.2547-T1
Valid prediction for GeneMark_model.36264_t
Valid prediction for snap_scaffold_8-snap.2552-T1
Valid prediction for GeneMark_model.36255_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17421, rend_intergenic: 8557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28715, rend_intergenic: 26105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52306, rend_intergenic: 32418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69793, rend_intergenic: 62621  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81086, rend_intergenic: 70341  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87728, rend_intergenic: 82337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108529, rend_intergenic: 103835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117988, rend_intergenic: 114204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134913, rend_intergenic: 118965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138606, rend_intergenic: 136480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146747, rend_intergenic: 139408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164987, rend_intergenic: 153534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171261, rend_intergenic: 166099  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203238, rend_intergenic: 199649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 207267
-exon list size: 590


building trellis

0.2    
0.3    
0.5    
0.7    
0.8    
1.0    
1.2    
1.4    
1.5    
1.7    
1.9    
2.0    
2.2    
2.4    
2.5    
2.7    
2.9    
3.0    
3.2    
3.4    
3.5    
3.7    
3.9    
4.1    
4.2    
4.4    
4.6    
4.7    
4.9    
5.1    
5.2    
5.4    
5.6    
5.7    
5.9    
6.1    
6.2    
6.4    
6.6    
6.8    
6.9    
7.1    
7.3    
7.4    
7.6    
7.8    
7.9    
8.1    
8.3    
8.4    
8.6    
8.8    
9.0    
9.1    
9.3    
9.5    
9.6    
9.8    
10.0    
10.1    
10.3    
10.5    
10.6    
10.8    
11.0    
11.1    
11.3    
11.5    
11.7    
11.8    
12.0    
12.2    
12.3    
12.5    
12.7    
12.8    
13.0    
13.2    
13.3    
13.5    
13.7    
13.9    
14.0    
14.2    
14.4    
14.5    
14.7    
14.9    
15.0    
15.2    
15.4    
15.5    
15.7    
15.9    
16.0    
16.2    
16.4    
16.6    
16.7    
16.9    
17.1    
17.2    
17.4    
17.6    
17.7    
17.9    
18.1    
18.2    
18.4    
18.6    
18.8    
18.9    
19.1    
19.3    
19.4    
19.6    
19.8    
19.9    
20.1    
20.3    
20.4    
20.6    
20.8    
20.9    
21.1    
21.3    
21.5    
21.6    
21.8    
22.0    
22.1    
22.3    
22.5    
22.6    
22.8    
23.0    
23.1    
23.3    
23.5    
23.6    
23.8    
24.0    
24.2    
24.3    
24.5    
24.7    
24.8    
25.0    
25.2    
25.3    
25.5    
25.7    
25.8    
26.0    
26.2    
26.4    
26.5    
26.7    
26.9    
27.0    
27.2    
27.4    
27.5    
27.7    
27.9    
28.0    
28.2    
28.4    
28.5    
28.7    
28.9    
29.1    
29.2    
29.4    
29.6    
29.7    
29.9    
30.1    
30.2    
30.4    
30.6    
30.7    
30.9    
31.1    
31.2    
31.4    
31.6    
31.8    
31.9    
32.1    
32.3    
32.4    
32.6    
32.8    
32.9    
33.1    
33.3    
33.4    
33.6    
33.8    
34.0    
34.1    
34.3    
34.5    
34.6    
34.8    
35.0    
35.1    
35.3    
35.5    
35.6    
35.8    
36.0    
36.1    
36.3    
36.5    
36.7    
36.8    
37.0    
37.2    
37.3    
37.5    
37.7    
37.8    
38.0    
38.2    
38.3    
38.5    
38.7    
38.9    
39.0    
39.2    
39.4    
39.5    
39.7    
39.9    
40.0    
40.2    
40.4    
40.5    
40.7    
40.9    
41.0    
41.2    
41.4    
41.6    
41.7    
41.9    
42.1    
42.2    
42.4    
42.6    
42.7    
42.9    
43.1    
43.2    
43.4    
43.6    
43.8    
43.9    
44.1    
44.3    
44.4    
44.6    
44.8    
44.9    
45.1    
45.3    
45.4    
45.6    
45.8    
45.9    
46.1    
46.3    
46.5    
46.6    
46.8    
47.0    
47.1    
47.3    
47.5    
47.6    
47.8    
48.0    
48.1    
48.3    
48.5    
48.6    
48.8    
49.0    
49.2    
49.3    
49.5    
49.7    
49.8    
50.0    
50.2    
50.3    
50.5    
50.7    
50.8    
51.0    
51.2    
51.4    
51.5    
51.7    
51.9    
52.0    
52.2    
52.4    
52.5    
52.7    
52.9    
53.0    
53.2    
53.4    
53.5    
53.7    
53.9    
54.1    
54.2    
54.4    
54.6    
54.7    
54.9    
55.1    
55.2    
55.4    
55.6    
55.7    
55.9    
56.1    
56.2    
56.4    
56.6    
56.8    
56.9    
57.1    
57.3    
57.4    
57.6    
57.8    
57.9    
58.1    
58.3    
58.4    
58.6    
58.8    
59.0    
59.1    
59.3    
59.5    
59.6    
59.8    
60.0    
60.1    
60.3    
60.5    
60.6    
60.8    
61.0    
61.1    
61.3    
61.5    
61.7    
61.8    
62.0    
62.2    
62.3    
62.5    
62.7    
62.8    
63.0    
63.2    
63.3    
63.5    
63.7    
63.9    
64.0    
64.2    
64.4    
64.5    
64.7    
64.9    
65.0    
65.2    
65.4    
65.5    
65.7    
65.9    
66.0    
66.2    
66.4    
66.6    
66.7    
66.9    
67.1    
67.2    
67.4    
67.6    
67.7    
67.9    
68.1    
68.2    
68.4    
68.6    
68.8    
68.9    
69.1    
69.3    
69.4    
69.6    
69.8    
69.9    
70.1    
70.3    
70.4    
70.6    
70.8    
70.9    
71.1    
71.3    
71.5    
71.6    
71.8    
72.0    
72.1    
72.3    
72.5    
72.6    
72.8    
73.0    
73.1    
73.3    
73.5    
73.6    
73.8    
74.0    
74.2    
74.3    
74.5    
74.7    
74.8    
75.0    
75.2    
75.3    
75.5    
75.7    
75.8    
76.0    
76.2    
76.4    
76.5    
76.7    
76.9    
77.0    
77.2    
77.4    
77.5    
77.7    
77.9    
78.0    
78.2    
78.4    
78.5    
78.7    
78.9    
79.1    
79.2    
79.4    
79.6    
79.7    
79.9    
80.1    
80.2    
80.4    
80.6    
80.7    
80.9    
81.1    
81.2    
81.4    
81.6    
81.8    
81.9    
82.1    
82.3    
82.4    
82.6    
82.8    
82.9    
83.1    
83.3    
83.4    
83.6    
83.8    
84.0    
84.1    
84.3    
84.5    
84.6    
84.8    
85.0    
85.1    
85.3    
85.5    
85.6    
85.8    
86.0    
86.1    
86.3    
86.5    
86.7    
86.8    
87.0    
87.2    
87.3    
87.5    
87.7    
87.8    
88.0    
88.2    
88.3    
88.5    
88.7    
88.9    
89.0    
89.2    
89.4    
89.5    
89.7    
89.9    
90.0    
90.2    
90.4    
90.5    
90.7    
90.9    
91.0    
91.2    
91.4    
91.6    
91.7    
91.9    
92.1    
92.2    
92.4    
92.6    
92.7    
92.9    
93.1    
93.2    
93.4    
93.6    
93.8    
93.9    
94.1    
94.3    
94.4    
94.6    
94.8    
94.9    
95.1    
95.3    
95.4    
95.6    
95.8    
95.9    
96.1    
96.3    
96.5    
96.6    
96.8    
97.0    
97.1    
97.3    
97.5    
97.6    
97.8    
98.0    
98.1    
98.3    
98.5    
98.6    
98.8    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 17421, rend_intergenic: 8557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28715, rend_intergenic: 26105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52306, rend_intergenic: 32418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69793, rend_intergenic: 62621  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81086, rend_intergenic: 70341  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87728, rend_intergenic: 82337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108529, rend_intergenic: 103835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117988, rend_intergenic: 114204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134913, rend_intergenic: 118965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138606, rend_intergenic: 136480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146747, rend_intergenic: 139408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164987, rend_intergenic: 153534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171261, rend_intergenic: 166099  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203238, rend_intergenic: 199649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 186578 - 207267
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 186578 - 197460
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support