-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_13622918-13857110

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.2486-T1
Valid prediction for GeneMark_model.36205_t
Valid prediction for GeneMark_model.36152_t
Valid prediction for snap_scaffold_8-snap.2500-T1
Valid prediction for GeneMark_model.36166_t
Valid prediction for GeneMark_model.36201_t
Valid prediction for GlimmerHMM_glimmerT_21223-T1
Valid prediction for GeneMark_model.36199_t
Valid prediction for GeneMark_model.36170_t
Valid prediction for snap_scaffold_8-snap.2528-T1
Valid prediction for snap_scaffold_8-snap.2523-T1
Valid prediction for Augustus_model.g14233.t1
Valid prediction for GeneMark_model.36173_t
Valid prediction for snap_scaffold_8-snap.2501-T1
Valid prediction for snap_scaffold_8-snap.2499-T1
Valid prediction for GeneMark_model.36177_t
Valid prediction for snap_scaffold_8-snap.2494-T1
Valid prediction for snap_scaffold_8-snap.2491-T1
Valid prediction for GeneMark_model.36180_t
Valid prediction for GlimmerHMM_glimmerT_21198-T1
Valid prediction for GlimmerHMM_glimmerT_21195-T1
Valid prediction for GeneMark_model.36172_t
Valid prediction for snap_scaffold_8-snap.2502-T1
Valid prediction for GeneMark_model.36176_t
Valid prediction for GeneMark_model.36178_t
Valid prediction for GlimmerHMM_glimmerT_21202-T1
Valid prediction for snap_scaffold_8-snap.2513-T1
Valid prediction for snap_scaffold_8-snap.2520-T1
Valid prediction for GlimmerHMM_glimmerT_21206-T1
Valid prediction for GeneMark_model.36196_t
Valid prediction for GeneMark_model.36182_t
Valid prediction for GeneMark_model.36156_t
Valid prediction for snap_scaffold_8-snap.2510-T1
Valid prediction for GeneMark_model.36206_t
Valid prediction for GlimmerHMM_glimmerT_21210-T1
Valid prediction for GlimmerHMM_glimmerT_21201-T1
Valid prediction for snap_scaffold_8-snap.2492-T1
Valid prediction for GlimmerHMM_glimmerT_21207-T1
Valid prediction for GlimmerHMM_glimmerT_21211-T1
Valid prediction for snap_scaffold_8-snap.2496-T1
Valid prediction for GeneMark_model.36160_t
Valid prediction for GeneMark_model.36167_t
Valid prediction for GlimmerHMM_glimmerT_21197-T1
Valid prediction for snap_scaffold_8-snap.2526-T1
Valid prediction for snap_scaffold_8-snap.2489-T1
Valid prediction for GeneMark_model.36181_t
Valid prediction for GeneMark_model.36149_t
Valid prediction for GeneMark_model.36204_t
Valid prediction for snap_scaffold_8-snap.2487-T1
Valid prediction for snap_scaffold_8-snap.2483-T1
Valid prediction for GeneMark_model.36163_t
Valid prediction for GeneMark_model.36217_t
Valid prediction for GlimmerHMM_glimmerT_21203-T1
Valid prediction for GeneMark_model.36211_t
Valid prediction for Augustus_model.g14232.t1
Valid prediction for GeneMark_model.36158_t
Valid prediction for Augustus_model.g14234.t1
Valid prediction for GeneMark_model.36154_t
Valid prediction for GlimmerHMM_glimmerT_21218-T1
Valid prediction for GeneMark_model.36184_t
Valid prediction for GeneMark_model.36209_t
Valid prediction for GlimmerHMM_glimmerT_21204-T1
Valid prediction for GeneMark_model.36165_t
Valid prediction for snap_scaffold_8-snap.2514-T1
Valid prediction for GeneMark_model.36169_t
Valid prediction for GeneMark_model.36192_t
Valid prediction for Augustus_model.g14230.t1
Valid prediction for Augustus_model.g14229.t1
Valid prediction for GeneMark_model.36219_t
Valid prediction for GeneMark_model.36194_t
Valid prediction for GeneMark_model.36189_t
Valid prediction for GlimmerHMM_glimmerT_21216-T1
Valid prediction for GlimmerHMM_glimmerT_21193-T1
Valid prediction for Augustus_model.g14231.t1
Valid prediction for snap_scaffold_8-snap.2498-T1
Valid prediction for GeneMark_model.36150_t
Valid prediction for GeneMark_model.36146_t
Valid prediction for snap_scaffold_8-snap.2505-T1
Valid prediction for GeneMark_model.36174_t
Valid prediction for GlimmerHMM_glimmerT_21215-T1
Valid prediction for snap_scaffold_8-snap.2518-T1
Valid prediction for snap_scaffold_8-snap.2509-T1
Valid prediction for GlimmerHMM_glimmerT_21205-T1
Valid prediction for Augustus_model.g14228.t1
Valid prediction for GeneMark_model.36198_t
Valid prediction for snap_scaffold_8-snap.2506-T1
Valid prediction for GeneMark_model.36186_t
Valid prediction for GlimmerHMM_glimmerT_21199-T1
Valid prediction for snap_scaffold_8-snap.2511-T1
Valid prediction for GeneMark_model.36202_t
Valid prediction for GeneMark_model.36195_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.36153_t
Valid prediction for GeneMark_model.36175_t
Valid prediction for GlimmerHMM_glimmerT_21217-T1
Valid prediction for GeneMark_model.36213_t
Valid prediction for snap_scaffold_8-snap.2519-T1
Valid prediction for GlimmerHMM_glimmerT_21214-T1
Valid prediction for GeneMark_model.36191_t
Valid prediction for GeneMark_model.36197_t
Valid prediction for GlimmerHMM_glimmerT_21212-T1
Valid prediction for snap_scaffold_8-snap.2515-T1
Valid prediction for GeneMark_model.36218_t
Valid prediction for GeneMark_model.36190_t
Valid prediction for GeneMark_model.36157_t
Valid prediction for GeneMark_model.36212_t
Valid prediction for Augustus_model.g14236.t1
Valid prediction for snap_scaffold_8-snap.2521-T1
Valid prediction for GeneMark_model.36216_t
Valid prediction for GlimmerHMM_glimmerT_21221-T1
Valid prediction for GeneMark_model.36210_t
Valid prediction for GeneMark_model.36185_t
Valid prediction for snap_scaffold_8-snap.2485-T1
Valid prediction for GlimmerHMM_glimmerT_21219-T1
Valid prediction for GeneMark_model.36187_t
Valid prediction for GeneMark_model.36207_t
Valid prediction for snap_scaffold_8-snap.2524-T1
Valid prediction for GlimmerHMM_glimmerT_21200-T1
Valid prediction for GlimmerHMM_glimmerT_21209-T1
Valid prediction for GeneMark_model.36161_t
Valid prediction for snap_scaffold_8-snap.2504-T1
Valid prediction for GeneMark_model.36147_t
Valid prediction for snap_scaffold_8-snap.2525-T1
Valid prediction for Augustus_model.g14235.t1
Valid prediction for snap_scaffold_8-snap.2512-T1
Valid prediction for GeneMark_model.36179_t
Valid prediction for snap_scaffold_8-snap.2503-T1
Valid prediction for GlimmerHMM_glimmerT_21196-T1
Valid prediction for snap_scaffold_8-snap.2488-T1
Valid prediction for GlimmerHMM_glimmerT_21213-T1
Valid prediction for GeneMark_model.36183_t
Valid prediction for GeneMark_model.36188_t
Valid prediction for GeneMark_model.36200_t
Valid prediction for snap_scaffold_8-snap.2484-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.36164_t
Valid prediction for snap_scaffold_8-snap.2497-T1
Valid prediction for snap_scaffold_8-snap.2522-T1
Valid prediction for GeneMark_model.36168_t
Valid prediction for snap_scaffold_8-snap.2516-T1
Valid prediction for GeneMark_model.36193_t
Valid prediction for GeneMark_model.36171_t
Valid prediction for snap_scaffold_8-snap.2493-T1
Valid prediction for snap_scaffold_8-snap.2495-T1
Valid prediction for snap_scaffold_8-snap.2508-T1
Valid prediction for GeneMark_model.36203_t
Valid prediction for GlimmerHMM_glimmerT_21222-T1
Valid prediction for GeneMark_model.36159_t
Valid prediction for GeneMark_model.36155_t
Valid prediction for Augustus_model.g14238.t1
Valid prediction for snap_scaffold_8-snap.2490-T1
Valid prediction for GeneMark_model.36208_t
Valid prediction for GeneMark_model.36162_t
Valid prediction for GeneMark_model.36151_t
Valid prediction for GlimmerHMM_glimmerT_21208-T1
Valid prediction for Augustus_model.g14237.t1
Valid prediction for GeneMark_model.36214_t
Valid prediction for snap_scaffold_8-snap.2527-T1
Valid prediction for GeneMark_model.36148_t
Valid prediction for snap_scaffold_8-snap.2517-T1
Valid prediction for GlimmerHMM_glimmerT_21220-T1
Valid prediction for GlimmerHMM_glimmerT_21194-T1
Valid prediction for snap_scaffold_8-snap.2507-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9667, rend_intergenic: 4695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12982, rend_intergenic: 10203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23945, rend_intergenic: 18261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25546, rend_intergenic: 24690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28509, rend_intergenic: 26764  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36941, rend_intergenic: 29229  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47767, rend_intergenic: 38904  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56889, rend_intergenic: 52127  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67342, rend_intergenic: 60924  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73663, rend_intergenic: 69206  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81910, rend_intergenic: 79241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92349, rend_intergenic: 86865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95661, rend_intergenic: 92362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116616, rend_intergenic: 101346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141938, rend_intergenic: 124346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151759, rend_intergenic: 142214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176537, rend_intergenic: 167643  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184720, rend_intergenic: 181082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201917, rend_intergenic: 197167  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217617, rend_intergenic: 214665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 220753, rend_intergenic: 217869  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 232422, rend_intergenic: 225616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 234193
-exon list size: 868


building trellis

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77.0    
77.1    
77.2    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.7    
99.8    
99.9    
-found 51 predictions from path traversal
Error with prediction: snap lend_intergenic: 9667, rend_intergenic: 4695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12982, rend_intergenic: 10203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23945, rend_intergenic: 18261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25546, rend_intergenic: 24690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28509, rend_intergenic: 26764  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36941, rend_intergenic: 29229  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47767, rend_intergenic: 38904  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56889, rend_intergenic: 52127  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67342, rend_intergenic: 60924  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73663, rend_intergenic: 69206  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81910, rend_intergenic: 79241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92349, rend_intergenic: 86865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95661, rend_intergenic: 92362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116616, rend_intergenic: 101346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141938, rend_intergenic: 124346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151759, rend_intergenic: 142214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176537, rend_intergenic: 167643  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184720, rend_intergenic: 181082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201917, rend_intergenic: 197167  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217617, rend_intergenic: 214665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 220753, rend_intergenic: 217869  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 232422, rend_intergenic: 225616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support