-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_12750899-13012902 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 102434, 102463 Couldn't classify 103003, 103130 Sorry, prediction pasa_asmbl_52335.p1 fails validation. (GAG) TG 102434-102463 GT AGG (ATC) AG 102557-102662 GT TGG (ATG) AG 102770-102874 GT AGG (AGA) AG 103003-103130 CC CGC add_exon() Sorry, pasa_asmbl_52335.p1 102770-102874-initial-1 is invalid. -recovered pasa_asmbl_52335.p1, initial, 102770, 102874 -recovered pasa_asmbl_52335.p1, internal, 102557, 102662 -recovered pasa_asmbl_52335.p1, internal, 102770, 102874 Valid prediction for GeneMark_model.35949_t Valid prediction for snap_scaffold_8-snap.2337-T1 Valid prediction for snap_scaffold_8-snap.2330-T1 Valid prediction for Augustus_model.g14162.t1 Valid prediction for snap_scaffold_8-snap.2325-T1 Valid prediction for Augustus_model.g14170.t1 Valid prediction for GlimmerHMM_glimmerT_21069-T1 Couldn't classify 213561, 213717 Sorry, prediction pasa_asmbl_52338.p1 fails validation. (TGG) TG 213561-213717 GT AGG (ACG) AG 214441-214608 GT CGG (GGT) AG 214696-214879 GT AGG (GGC) AG 215732-215824 GT AGG (GGG) AG 216117-216215 GT AGG (GAA) AG 216456-216525 GT ATG (GTA) AG 216641-216725 GT AGG (AGA) AG 218475-218683 CT AAC -recovered pasa_asmbl_52338.p1, terminal, 218475, 218683 -recovered pasa_asmbl_52338.p1, internal, 214441, 214608 -recovered pasa_asmbl_52338.p1, internal, 214696, 214879 -recovered pasa_asmbl_52338.p1, internal, 215732, 215824 -recovered pasa_asmbl_52338.p1, internal, 216117, 216215 -recovered pasa_asmbl_52338.p1, internal, 216456, 216525 -recovered pasa_asmbl_52338.p1, internal, 216641, 216725 Valid prediction for GeneMark_model.35933_t Valid prediction for snap_scaffold_8-snap.2333-T1 Valid prediction for GeneMark_model.35962_t Valid prediction for snap_scaffold_8-snap.2342-T1 Valid prediction for GeneMark_model.35939_t Valid prediction for snap_scaffold_8-snap.2343-T1 Valid prediction for snap_scaffold_8-snap.2328-T1 Valid prediction for GlimmerHMM_glimmerT_21076-T1 Valid prediction for GeneMark_model.35957_t Valid prediction for GeneMark_model.35937_t Valid prediction for GeneMark_model.35940_t Valid prediction for GeneMark_model.35960_t Valid prediction for snap_scaffold_8-snap.2350-T1 Valid prediction for GlimmerHMM_glimmerT_21080-T1 Valid prediction for snap_scaffold_8-snap.2348-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GeneMark_model.35931_t Valid prediction for Augustus_model.g14156.t1 Valid prediction for GlimmerHMM_glimmerT_21096-T1 Valid prediction for GeneMark_model.35934_t Valid prediction for GlimmerHMM_glimmerT_21093-T1 Valid prediction for snap_scaffold_8-snap.2351-T1 Couldn't classify 103257, 103433 Sorry, prediction pasa_asmbl_52336.p1 fails validation. (TAT) GG 103257-103433 GT AGG (GTG) AG 103533-103667 GT CGG (GTT) AG 103761-103877 GT AGG (GGC) AG 103977-104116 GT AGG (TTT) AG 104498-104510 GA AGG -recovered pasa_asmbl_52336.p1, terminal, 104498, 104510 -recovered pasa_asmbl_52336.p1, internal, 103533, 103667 -recovered pasa_asmbl_52336.p1, internal, 103761, 103877 -recovered pasa_asmbl_52336.p1, internal, 103977, 104116 Valid prediction for GeneMark_model.35965_t Valid prediction for snap_scaffold_8-snap.2346-T1 Valid prediction for GeneMark_model.35969_t Valid prediction for Augustus_model.g14165.t1 Valid prediction for Augustus_model.g14157.t1 Valid prediction for GeneMark_model.35958_t Valid prediction for GeneMark_model.35945_t Couldn't classify 45133, 45558 Sorry, prediction pasa_asmbl_53235.p1 fails validation. (ACA) AC 45133-45558 TG TGT Valid prediction for Augustus_model.g14161.t1 Valid prediction for Augustus_model.g14168.t1 Valid prediction for GlimmerHMM_glimmerT_21095-T1 Valid prediction for GlimmerHMM_glimmerT_21083-T1 Valid prediction for snap_scaffold_8-snap.2340-T1 Valid prediction for Augustus_model.g14150.t1 Valid prediction for snap_scaffold_8-snap.2331-T1 Valid prediction for snap_scaffold_8-snap.2329-T1 Valid prediction for snap_scaffold_8-snap.2324-T1 Valid prediction for GlimmerHMM_glimmerT_21091-T1 Valid prediction for snap_scaffold_8-snap.2345-T1 Valid prediction for GlimmerHMM_glimmerT_21098-T1 Valid prediction for snap_scaffold_8-snap.2355-T1 Valid prediction for GlimmerHMM_glimmerT_21079-T1 Valid prediction for snap_scaffold_8-snap.2349-T1 Valid prediction for GeneMark_model.35954_t Valid prediction for GlimmerHMM_glimmerT_21088-T1 Valid prediction for GeneMark_model.35930_t Valid prediction for GeneMark_model.35952_t Valid prediction for GeneMark_model.35966_t Valid prediction for GeneMark_model.35928_t Valid prediction for HiQ_model.g14159.t1 Valid prediction for snap_scaffold_8-snap.2335-T1 Couldn't classify 100819, 100932 Couldn't classify 102176, 102198 Sorry, prediction pasa_asmbl_52334.p1 fails validation. (TCC) AC 100819-100932 GT AGG (TTT) AG 101026-101079 GT AGG (TTT) AG 101170-101226 GT AGG (ATC) AG 101330-101409 GT AAG (GAT) AG 101528-101729 GT TGG (AGG) AG 101898-102063 GT GCG (GCT) AG 102176-102198 GA AGG -recovered pasa_asmbl_52334.p1, internal, 101026, 101079 -recovered pasa_asmbl_52334.p1, internal, 101170, 101226 -recovered pasa_asmbl_52334.p1, internal, 101330, 101409 -recovered pasa_asmbl_52334.p1, internal, 101528, 101729 -recovered pasa_asmbl_52334.p1, internal, 101898, 102063 Valid prediction for GlimmerHMM_glimmerT_21086-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_53238.p1 Valid prediction for snap_scaffold_8-snap.2327-T1 Valid prediction for snap_scaffold_8-snap.2336-T1 Valid prediction for snap_scaffold_8-snap.2323-T1 Valid prediction for snap_scaffold_8-snap.2357-T1 Valid prediction for snap_scaffold_8-snap.2359-T1 Valid prediction for GlimmerHMM_glimmerT_21071-T1 Valid prediction for Augustus_model.g14151.t1 Couldn't classify 189727, 189882 Couldn't classify 192099, 192121 Sorry, prediction pasa_asmbl_53242.p1 fails validation. (TGG) GG 189727-189882 GT AGG (GCC) AG 190243-190320 GT AGG (ATC) AG 190531-190607 GT AGG (CCT) AG 191583-191650 GT TGG (AGG) AG 192099-192121 AG AGA -recovered pasa_asmbl_53242.p1, internal, 190243, 190320 -recovered pasa_asmbl_53242.p1, internal, 190531, 190607 -recovered pasa_asmbl_53242.p1, internal, 191583, 191650 Valid prediction for pasa_asmbl_53249.p1 Valid prediction for CodingQuarry_transcript_59727-T1 Valid prediction for HiQ_model.g14167.t1 Couldn't classify 93558, 93559 Sorry, prediction CodingQuarry_transcript_59721-T1 fails validation. (ATG) AG 93558-93559 GT ATG (GTA) AG 94181-94266 GT CGG (ACA) AG 94431-94556 GT AGG (GAG) AG 94857-94978 GT AGG (GGT) AG 95123-95335 GT ACG (CTG) AG 95692-95833 GT AGG (ATC) AG 96104-96327 GT AGG (GAG) AG 96622-96749 GT CTG (GTA) AG 96952-97066 GT ACG (GAA) AG 97197-97304 GT AGG (GAC) AG 97476-97592 GT AGG (AAC) AG 97689-97829 GT AGG (GTC) AG 98217-98310 GT AGG (GCT) AG 99041-99166 GT CGG (AGT) AG 101094-101242 TT GAT add_exon() Sorry, CodingQuarry_transcript_59721-T1 98217-98310-terminal-3 is invalid. -recovered CodingQuarry_transcript_59721-T1, terminal, 98217, 98310 -recovered CodingQuarry_transcript_59721-T1, terminal, 101094, 101242 -recovered CodingQuarry_transcript_59721-T1, internal, 93558, 93559 -recovered CodingQuarry_transcript_59721-T1, internal, 94181, 94266 -recovered CodingQuarry_transcript_59721-T1, internal, 94431, 94556 -recovered CodingQuarry_transcript_59721-T1, internal, 94857, 94978 -recovered CodingQuarry_transcript_59721-T1, internal, 95123, 95335 -recovered CodingQuarry_transcript_59721-T1, internal, 95692, 95833 -recovered CodingQuarry_transcript_59721-T1, internal, 96104, 96327 -recovered CodingQuarry_transcript_59721-T1, internal, 96622, 96749 -recovered CodingQuarry_transcript_59721-T1, internal, 96952, 97066 -recovered CodingQuarry_transcript_59721-T1, internal, 97197, 97304 -recovered CodingQuarry_transcript_59721-T1, internal, 97476, 97592 -recovered CodingQuarry_transcript_59721-T1, internal, 97689, 97829 -recovered CodingQuarry_transcript_59721-T1, internal, 98217, 98310 -recovered CodingQuarry_transcript_59721-T1, internal, 99041, 99166 Valid prediction for snap_scaffold_8-snap.2356-T1 Valid prediction for GeneMark_model.35972_t Valid prediction for snap_scaffold_8-snap.2361-T1 Couldn't classify 253628, 253687 Couldn't classify 257883, 257906 Sorry, prediction pasa_asmbl_53232.p1 fails validation. (CTG) TT 253628-253687 GT TGG (AAG) AG 255365-255488 GT AGG (CCG) AG 256798-256884 GT AGG (CCC) AG 257465-257628 GT TGG (GTG) AG 257883-257906 GG CAG add_exon() Sorry, pasa_asmbl_53232.p1 256798-256884-terminal-1 is invalid. -recovered pasa_asmbl_53232.p1, terminal, 256798, 256884 -recovered pasa_asmbl_53232.p1, internal, 255365, 255488 -recovered pasa_asmbl_53232.p1, internal, 256798, 256884 -recovered pasa_asmbl_53232.p1, internal, 257465, 257628 Valid prediction for HiQ_model.g14169.t1 Valid prediction for Augustus_model.g14155.t1 Valid prediction for Augustus_model.g14174.t1 Valid prediction for GeneMark_model.35964_t Couldn't classify 149218, 149281 Couldn't classify 152084, 152195 Sorry, prediction pasa_asmbl_53246.p2 fails validation. (AAG) AC 149218-149281 GT AGG (ATA) AG 149389-149484 GT TGG (AAA) AG 149959-150156 GT AAG (AAC) AG 150376-150442 GT AGG (TCC) AG 151179-151259 GT AGG (AGG) AG 152084-152195 AC CCA -recovered pasa_asmbl_53246.p2, internal, 149389, 149484 -recovered pasa_asmbl_53246.p2, internal, 149959, 150156 -recovered pasa_asmbl_53246.p2, internal, 150376, 150442 -recovered pasa_asmbl_53246.p2, internal, 151179, 151259 Valid prediction for GeneMark_model.35936_t Valid prediction for HiQ_model.g14154.t1 Valid prediction for GeneMark_model.35942_t Valid prediction for pasa_asmbl_53251.p1 Valid prediction for GeneMark_model.35929_t Valid prediction for GlimmerHMM_glimmerT_21084-T1 Valid prediction for snap_scaffold_8-snap.2352-T1 Valid prediction for GeneMark_model.35956_t Valid prediction for GeneMark_model.35961_t Valid prediction for GeneMark_model.35932_t Valid prediction for GlimmerHMM_glimmerT_21070-T1 Valid prediction for GeneMark_model.35951_t Couldn't classify 154055, 154334 Sorry, prediction pasa_asmbl_53245.p1 fails validation. (ACT) AC 154055-154334 GT AGG (GTC) AG 154443-154634 GT GGG (ACA) AG 154877-155068 GT GGG (GCC) AG 155669-155851 GT GGG (AAT) AG 156085-156179 GT AGG (TGC) AG 156297-156493 GT TGG (GCA) AG 156642-156778 GT AGG (ACA) AG 156963-157153 TC AAT -recovered pasa_asmbl_53245.p1, terminal, 156963, 157153 -recovered pasa_asmbl_53245.p1, internal, 154443, 154634 -recovered pasa_asmbl_53245.p1, internal, 154877, 155068 -recovered pasa_asmbl_53245.p1, internal, 155669, 155851 -recovered pasa_asmbl_53245.p1, internal, 156085, 156179 -recovered pasa_asmbl_53245.p1, internal, 156297, 156493 -recovered pasa_asmbl_53245.p1, internal, 156642, 156778 Valid prediction for pasa_asmbl_53265.p1 Valid prediction for GeneMark_model.35973_t Couldn't classify 192635, 192733 Couldn't classify 194614, 194777 Sorry, prediction pasa_asmbl_53241.p1 fails validation. (AAC) CC 192635-192733 GT GGG (CTG) AG 192862-192949 GT CTG (TGT) AG 193066-193229 GT AGG (ACC) AG 193337-193421 GT AAG (TGT) AG 193536-193699 GT AGG (GGA) AG 193884-194044 GT AGG (GTA) AG 194266-194390 GT ACG (GTA) AG 194614-194777 GT ATG -recovered pasa_asmbl_53241.p1, internal, 192862, 192949 -recovered pasa_asmbl_53241.p1, internal, 193066, 193229 -recovered pasa_asmbl_53241.p1, internal, 193337, 193421 -recovered pasa_asmbl_53241.p1, internal, 193536, 193699 -recovered pasa_asmbl_53241.p1, internal, 193884, 194044 -recovered pasa_asmbl_53241.p1, internal, 194266, 194390 -recovered pasa_asmbl_53241.p1, internal, 194614, 194777 Valid prediction for snap_scaffold_8-snap.2338-T1 Valid prediction for pasa_asmbl_53237.p1 Valid prediction for GlimmerHMM_glimmerT_21082-T1 Valid prediction for HiQ_model.g14172.t1 Valid prediction for Augustus_model.g14152.t1 Valid prediction for Augustus_model.g14149.t1 Valid prediction for GlimmerHMM_glimmerT_21085-T1 Valid prediction for GlimmerHMM_glimmerT_21094-T1 Valid prediction for CodingQuarry_transcript_59726-T1 Valid prediction for GlimmerHMM_glimmerT_21073-T1 Couldn't classify 212070, 212198 Sorry, prediction pasa_asmbl_53236.p1 fails validation. (ATG) CC 208297-208428 GT GGG (GTG) AG 210363-210473 GT AGG (GGG) AG 212070-212198 AT AGA -recovered pasa_asmbl_53236.p1, initial, 208297, 208428 -recovered pasa_asmbl_53236.p1, internal, 210363, 210473 Valid prediction for snap_scaffold_8-snap.2354-T1 Valid prediction for GeneMark_model.35970_t Valid prediction for GlimmerHMM_glimmerT_21097-T1 Valid prediction for GlimmerHMM_glimmerT_21074-T1 Valid prediction for CodingQuarry_transcript_59722-T1 Valid prediction for GeneMark_model.35927_t Valid prediction for GeneMark_model.35947_t Valid prediction for GlimmerHMM_glimmerT_21090-T1 Couldn't classify 30409, 30449 Sorry, prediction pasa_asmbl_53268.p1 fails validation. (CAA) TG 30409-30449 GT AAG (GAT) AG 31087-31210 GT AGG (GTC) AG 31591-31639 GT AGG (GCT) AG 31806-31904 GT AGG (TTG) AG 32104-32180 AC AAA -recovered pasa_asmbl_53268.p1, terminal, 32104, 32180 -recovered pasa_asmbl_53268.p1, internal, 31087, 31210 -recovered pasa_asmbl_53268.p1, internal, 31591, 31639 -recovered pasa_asmbl_53268.p1, internal, 31806, 31904 Valid prediction for GlimmerHMM_glimmerT_21087-T1 Valid prediction for GeneMark_model.35935_t Couldn't classify 161994, 162057 Sorry, prediction pasa_asmbl_53244.p1 fails validation. (CAC) AC 161994-162057 GT AGG (TAA) AG 162745-162994 GT AAG (ATA) AG 163100-163221 GT AGG (GGG) AG 163578-164149 CA AGC -recovered pasa_asmbl_53244.p1, terminal, 163578, 164149 -recovered pasa_asmbl_53244.p1, internal, 162745, 162994 -recovered pasa_asmbl_53244.p1, internal, 163100, 163221 Valid prediction for CodingQuarry_transcript_59719-T1 Valid prediction for GeneMark_model.35948_t Valid prediction for snap_scaffold_8-snap.2360-T1 Valid prediction for GlimmerHMM_glimmerT_21101-T1 Valid prediction for GlimmerHMM_glimmerT_21077-T1 Valid prediction for HiQ_model.g14164.t1 Valid prediction for CodingQuarry_transcript_59724-T1 Valid prediction for GlimmerHMM_glimmerT_21072-T1 Couldn't classify 223586, 223667 Sorry, prediction pasa_asmbl_53234.p1 fails validation. (CAC) TG 223586-223667 GT CGG (CCA) AG 225922-225960 GT TGG (TGT) AG 226098-226183 GT AGG (GTG) AG 226512-226561 GT AAG (TAT) AG 227434-227654 GT GGG (GGC) AG 229728-229993 GT AGG (GGT) AG 230252-230476 GT CTG (CAC) AG 230927-231010 GT AGG (CTG) AG 231262-231460 GT AGG (ACG) AG 231604-231806 AA GAA -recovered pasa_asmbl_53234.p1, terminal, 231604, 231806 -recovered pasa_asmbl_53234.p1, internal, 225922, 225960 -recovered pasa_asmbl_53234.p1, internal, 226098, 226183 -recovered pasa_asmbl_53234.p1, internal, 226512, 226561 -recovered pasa_asmbl_53234.p1, internal, 227434, 227654 -recovered pasa_asmbl_53234.p1, internal, 229728, 229993 -recovered pasa_asmbl_53234.p1, internal, 230252, 230476 -recovered pasa_asmbl_53234.p1, internal, 230927, 231010 -recovered pasa_asmbl_53234.p1, internal, 231262, 231460 Valid prediction for GeneMark_model.35938_t Valid prediction for GlimmerHMM_glimmerT_21075-T1 Valid prediction for GeneMark_model.35963_t Valid prediction for GeneMark_model.35950_t Valid prediction for GeneMark_model.35955_t Valid prediction for snap_scaffold_8-snap.2344-T1 Couldn't classify 258441, 258663 Sorry, prediction pasa_asmbl_53231.p1 fails validation. (CAC) CT 258441-258663 GT AGG (GGC) AG 258851-258922 GT TGG (TTT) AG 259028-259368 AG AGA -recovered pasa_asmbl_53231.p1, terminal, 259028, 259368 -recovered pasa_asmbl_53231.p1, internal, 258851, 258922 Valid prediction for GlimmerHMM_glimmerT_21068-T1 Valid prediction for GeneMark_model.35944_t Valid prediction for Augustus_model.g14163.t1 Valid prediction for snap_scaffold_8-snap.2353-T1 Valid prediction for snap_scaffold_8-snap.2339-T1 Valid prediction for CodingQuarry_transcript_59725-T1 Valid prediction for GeneMark_model.35941_t Valid prediction for GlimmerHMM_glimmerT_21081-T1 Valid prediction for HiQ_model.g14173.t1 Valid prediction for HiQ_model.g14153.t1 Valid prediction for GlimmerHMM_glimmerT_21078-T1 Valid prediction for GlimmerHMM_glimmerT_21089-T1 Valid prediction for snap_scaffold_8-snap.2334-T1 Valid prediction for snap_scaffold_8-snap.2341-T1 Valid prediction for pasa_asmbl_53263.p1 Valid prediction for CodingQuarry_transcript_59723-T1 Valid prediction for Augustus_model.g14160.t1 Valid prediction for snap_scaffold_8-snap.2332-T1 Valid prediction for GlimmerHMM_glimmerT_21100-T1 Valid prediction for GeneMark_model.35953_t Valid prediction for HiQ_model.g14158.t1 Valid prediction for GeneMark_model.35946_t Couldn't classify 232443, 232817 Sorry, prediction pasa_asmbl_53233.p3 fails validation. (TCC) CC 232443-232817 CA AGC Valid prediction for HiQ_model.g14171.t1 Valid prediction for snap_scaffold_8-snap.2347-T1 Valid prediction for GeneMark_model.35967_t Valid prediction for snap_scaffold_8-snap.2358-T1 Valid prediction for snap_scaffold_8-snap.2326-T1 Couldn't classify 31825, 31904 Sorry, prediction GeneMark_model.35971_t fails validation. (ATG) GG 31088-31210 GT AGG (GTC) AG 31591-31639 GT AGG (CAT) AG 31825-31904 GT AGG -recovered GeneMark_model.35971_t, initial, 31088, 31210 -recovered GeneMark_model.35971_t, internal, 31591, 31639 -recovered GeneMark_model.35971_t, internal, 31825, 31904 Valid prediction for GlimmerHMM_glimmerT_21092-T1 Valid prediction for pasa_asmbl_53266.p1 Valid prediction for GlimmerHMM_glimmerT_21099-T1 Valid prediction for GeneMark_model.35968_t Couldn't classify 152456, 152524 Couldn't classify 152870, 153097 Sorry, prediction pasa_asmbl_53651.p1 fails validation. (TCA) AG 152456-152524 GT GGG (GGC) AG 152631-152783 GT AGG (GAG) AG 152870-153097 AG CCA -recovered pasa_asmbl_53651.p1, internal, 152456, 152524 -recovered pasa_asmbl_53651.p1, internal, 152631, 152783 Valid prediction for GeneMark_model.35943_t Valid prediction for CodingQuarry_transcript_59728-T1 Valid prediction for CodingQuarry_transcript_59720-T1 Valid prediction for Augustus_model.g14166.t1 Valid prediction for GeneMark_model.35959_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15939, rend_intergenic: 4321 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43824, rend_intergenic: 28682 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46345, rend_intergenic: 44059 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52512, rend_intergenic: 46799 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 76265, rend_intergenic: 71108 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 105889, rend_intergenic: 104852 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 116390, rend_intergenic: 110067 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131377, rend_intergenic: 125762 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172442, rend_intergenic: 153509 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219156, rend_intergenic: 212098 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 262004 -exon list size: 752 building trellis 0.1 0.3 0.4 0.5 0.7 0.8 0.9 1.1 1.2 1.3 1.5 1.6 1.7 1.9 2.0 2.1 2.3 2.4 2.5 2.7 2.8 2.9 3.1 3.2 3.3 3.4 3.6 3.7 3.8 4.0 4.1 4.2 4.4 4.5 4.6 4.8 4.9 5.0 5.2 5.3 5.4 5.6 5.7 5.8 6.0 6.1 6.2 6.4 6.5 6.6 6.8 6.9 7.0 7.2 7.3 7.4 7.6 7.7 7.8 8.0 8.1 8.2 8.4 8.5 8.6 8.8 8.9 9.0 9.2 9.3 9.4 9.5 9.7 9.8 9.9 10.1 10.2 10.3 10.5 10.6 10.7 10.9 11.0 11.1 11.3 11.4 11.5 11.7 11.8 11.9 12.1 12.2 12.3 12.5 12.6 12.7 12.9 13.0 13.1 13.3 13.4 13.5 13.7 13.8 13.9 14.1 14.2 14.3 14.5 14.6 14.7 14.9 15.0 15.1 15.3 15.4 15.5 15.6 15.8 15.9 16.0 16.2 16.3 16.4 16.6 16.7 16.8 17.0 17.1 17.2 17.4 17.5 17.6 17.8 17.9 18.0 18.2 18.3 18.4 18.6 18.7 18.8 19.0 19.1 19.2 19.4 19.5 19.6 19.8 19.9 20.0 20.2 20.3 20.4 20.6 20.7 20.8 21.0 21.1 21.2 21.4 21.5 21.6 21.8 21.9 22.0 22.1 22.3 22.4 22.5 22.7 22.8 22.9 23.1 23.2 23.3 23.5 23.6 23.7 23.9 24.0 24.1 24.3 24.4 24.5 24.7 24.8 24.9 25.1 25.2 25.3 25.5 25.6 25.7 25.9 26.0 26.1 26.3 26.4 26.5 26.7 26.8 26.9 27.1 27.2 27.3 27.5 27.6 27.7 27.9 28.0 28.1 28.2 28.4 28.5 28.6 28.8 28.9 29.0 29.2 29.3 29.4 29.6 29.7 29.8 30.0 30.1 30.2 30.4 30.5 30.6 30.8 30.9 31.0 31.2 31.3 31.4 31.6 31.7 31.8 32.0 32.1 32.2 32.4 32.5 32.6 32.8 32.9 33.0 33.2 33.3 33.4 33.6 33.7 33.8 34.0 34.1 34.2 34.4 34.5 34.6 34.7 34.9 35.0 35.1 35.3 35.4 35.5 35.7 35.8 35.9 36.1 36.2 36.3 36.5 36.6 36.7 36.9 37.0 37.1 37.3 37.4 37.5 37.7 37.8 37.9 38.1 38.2 38.3 38.5 38.6 38.7 38.9 39.0 39.1 39.3 39.4 39.5 39.7 39.8 39.9 40.1 40.2 40.3 40.5 40.6 40.7 40.8 41.0 41.1 41.2 41.4 41.5 41.6 41.8 41.9 42.0 42.2 42.3 42.4 42.6 42.7 42.8 43.0 43.1 43.2 43.4 43.5 43.6 43.8 43.9 44.0 44.2 44.3 44.4 44.6 44.7 44.8 45.0 45.1 45.2 45.4 45.5 45.6 45.8 45.9 46.0 46.2 46.3 46.4 46.6 46.7 46.8 46.9 47.1 47.2 47.3 47.5 47.6 47.7 47.9 48.0 48.1 48.3 48.4 48.5 48.7 48.8 48.9 49.1 49.2 49.3 49.5 49.6 49.7 49.9 50.0 50.1 50.3 50.4 50.5 50.7 50.8 50.9 51.1 51.2 51.3 51.5 51.6 51.7 51.9 52.0 52.1 52.3 52.4 52.5 52.7 52.8 52.9 53.1 53.2 53.3 53.4 53.6 53.7 53.8 54.0 54.1 54.2 54.4 54.5 54.6 54.8 54.9 55.0 55.2 55.3 55.4 55.6 55.7 55.8 56.0 56.1 56.2 56.4 56.5 56.6 56.8 56.9 57.0 57.2 57.3 57.4 57.6 57.7 57.8 58.0 58.1 58.2 58.4 58.5 58.6 58.8 58.9 59.0 59.2 59.3 59.4 59.5 59.7 59.8 59.9 60.1 60.2 60.3 60.5 60.6 60.7 60.9 61.0 61.1 61.3 61.4 61.5 61.7 61.8 61.9 62.1 62.2 62.3 62.5 62.6 62.7 62.9 63.0 63.1 63.3 63.4 63.5 63.7 63.8 63.9 64.1 64.2 64.3 64.5 64.6 64.7 64.9 65.0 65.1 65.3 65.4 65.5 65.6 65.8 65.9 66.0 66.2 66.3 66.4 66.6 66.7 66.8 67.0 67.1 67.2 67.4 67.5 67.6 67.8 67.9 68.0 68.2 68.3 68.4 68.6 68.7 68.8 69.0 69.1 69.2 69.4 69.5 69.6 69.8 69.9 70.0 70.2 70.3 70.4 70.6 70.7 70.8 71.0 71.1 71.2 71.4 71.5 71.6 71.8 71.9 72.0 72.1 72.3 72.4 72.5 72.7 72.8 72.9 73.1 73.2 73.3 73.5 73.6 73.7 73.9 74.0 74.1 74.3 74.4 74.5 74.7 74.8 74.9 75.1 75.2 75.3 75.5 75.6 75.7 75.9 76.0 76.1 76.3 76.4 76.5 76.7 76.8 76.9 77.1 77.2 77.3 77.5 77.6 77.7 77.9 78.0 78.1 78.2 78.4 78.5 78.6 78.8 78.9 79.0 79.2 79.3 79.4 79.6 79.7 79.8 80.0 80.1 80.2 80.4 80.5 80.6 80.8 80.9 81.0 81.2 81.3 81.4 81.6 81.7 81.8 82.0 82.1 82.2 82.4 82.5 82.6 82.8 82.9 83.0 83.2 83.3 83.4 83.6 83.7 83.8 84.0 84.1 84.2 84.4 84.5 84.6 84.7 84.9 85.0 85.1 85.3 85.4 85.5 85.7 85.8 85.9 86.1 86.2 86.3 86.5 86.6 86.7 86.9 87.0 87.1 87.3 87.4 87.5 87.7 87.8 87.9 88.1 88.2 88.3 88.5 88.6 88.7 88.9 89.0 89.1 89.3 89.4 89.5 89.7 89.8 89.9 90.1 90.2 90.3 90.5 90.6 90.7 90.8 91.0 91.1 91.2 91.4 91.5 91.6 91.8 91.9 92.0 92.2 92.3 92.4 92.6 92.7 92.8 93.0 93.1 93.2 93.4 93.5 93.6 93.8 93.9 94.0 94.2 94.3 94.4 94.6 94.7 94.8 95.0 95.1 95.2 95.4 95.5 95.6 95.8 95.9 96.0 96.2 96.3 96.4 96.6 96.7 96.8 96.9 97.1 97.2 97.3 97.5 97.6 97.7 97.9 98.0 98.1 98.3 98.4 98.5 98.7 98.8 98.9 99.1 99.2 99.3 99.5 99.6 99.7 99.9 -found 34 predictions from path traversal Error with prediction: snap lend_intergenic: 15939, rend_intergenic: 4321 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43824, rend_intergenic: 28682 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46345, rend_intergenic: 44059 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52512, rend_intergenic: 46799 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 76265, rend_intergenic: 71108 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 105889, rend_intergenic: 104852 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 116390, rend_intergenic: 110067 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131377, rend_intergenic: 125762 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172442, rend_intergenic: 153509 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219156, rend_intergenic: 212098 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 25 predictions persist after filtering for low support -building DP trellis -building trellis in range 240774 - 262004 -exon list size: 4 building trellis 16.7 33.3 50.0 66.7 83.3 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 247750 - 262004 -exon list size: 2 building trellis 25.0 50.0 75.0 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 250439 - 262004 -exon list size: 1 building trellis 33.3 66.7 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support