-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_11258368-11625336

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.35758_t
Valid prediction for GeneMark_model.35749_t
Valid prediction for snap_scaffold_8-snap.2138-T1
Valid prediction for GlimmerHMM_glimmerT_20931-T1
Valid prediction for snap_scaffold_8-snap.2137-T1
Valid prediction for GeneMark_model.35731_t
Valid prediction for snap_scaffold_8-snap.2151-T1
Valid prediction for snap_scaffold_8-snap.2148-T1
Valid prediction for GlimmerHMM_glimmerT_20943-T1
Couldn't classify 169761, 170342
Sorry, prediction pasa_asmbl_52213.p1 fails validation.
(ATG)	 AA	169761-170342	GG	GGG
Valid prediction for GlimmerHMM_glimmerT_20944-T1
Valid prediction for snap_scaffold_8-snap.2126-T1
Couldn't classify 351789, 351829
Couldn't classify 352504, 352831
Sorry, prediction pasa_asmbl_52237.p2 fails validation.
(TCG)	 CG	351789-351829	GT	AGG
(CTT)	 AG	352504-352831	CG	TCC
Valid prediction for snap_scaffold_8-snap.2134-T1
Valid prediction for Augustus_model.g14026.t1
Valid prediction for CodingQuarry_transcript_59667-T1
Valid prediction for Augustus_model.g14029.t1
Valid prediction for CodingQuarry_transcript_59670-T1
Valid prediction for snap_scaffold_8-snap.2122-T1
Valid prediction for Augustus_model.g14028.t1
Couldn't classify 344434, 344556
Couldn't classify 346217, 346461
Sorry, prediction pasa_asmbl_52233.p1 fails validation.
(AGG)	 AC	344434-344556	GT	TGG
(AGC)	 AG	345021-345072	GT	AGG
(GCT)	 AG	346217-346461	CA	AGC
-recovered pasa_asmbl_52233.p1, internal, 345021, 345072
Valid prediction for Augustus_model.g14034.t1
Valid prediction for GeneMark_model.35726_t
Valid prediction for GeneMark_model.35729_t
Valid prediction for GlimmerHMM_glimmerT_20926-T1
Valid prediction for Augustus_model.g14042.t1
Couldn't classify 200734, 200822
Sorry, prediction pasa_asmbl_52216.p1 fails validation.
(GGC)	 CA	200734-200822	GT	AGG
(GTT)	 AG	201786-204114	GT	AGG
(TAC)	 AG	204318-204693	GT	AGG
(GGT)	 AG	204943-205311	GT	AGG
(GTC)	 AG	205560-205633	GA	GAG
-recovered pasa_asmbl_52216.p1, terminal, 205560, 205633
-recovered pasa_asmbl_52216.p1, internal, 201786, 204114
-recovered pasa_asmbl_52216.p1, internal, 204318, 204693
-recovered pasa_asmbl_52216.p1, internal, 204943, 205311
Valid prediction for pasa_asmbl_52228.p1
Couldn't classify 353653, 353695
Couldn't classify 354971, 355215
Sorry, prediction pasa_asmbl_52238.p1 fails validation.
(AAC)	 TG	353653-353695	GT	AGG
(GTG)	 AG	353982-354192	GT	AGG
(GCA)	 AG	354420-354586	GT	TTG
(CTC)	 AG	354732-354848	GT	AGG
(GTG)	 AG	354971-355215	GG	AGG
-recovered pasa_asmbl_52238.p1, internal, 353982, 354192
-recovered pasa_asmbl_52238.p1, internal, 354420, 354586
-recovered pasa_asmbl_52238.p1, internal, 354732, 354848
Valid prediction for HiQ_model.g14044.t1
Valid prediction for snap_scaffold_8-snap.2130-T1
Valid prediction for Augustus_model.g14037.t1
Valid prediction for GlimmerHMM_glimmerT_20928-T1
Valid prediction for GeneMark_model.35742_t
Valid prediction for HiQ_model.g14024.t1
Couldn't classify 305257, 305362
Sorry, prediction pasa_asmbl_52224.p1 fails validation.
(GAG)	 AA	305257-305362	GT	ACG
(TGT)	 AG	305703-305764	GT	AGG
(TAC)	 AG	306010-306202	GT	AGG
(ATG)	 AG	306353-306481	GT	GTG
(GTT)	 AG	306649-306754	GT	AGG
(GAT)	 AG	306950-307081	GT	GCG
(GTG)	 AG	307376-307676	CT	AAC
add_exon() Sorry, pasa_asmbl_52224.p1 306353-306481-initial-1 is invalid.
-recovered pasa_asmbl_52224.p1, initial, 306353, 306481
-recovered pasa_asmbl_52224.p1, terminal, 307376, 307676
-recovered pasa_asmbl_52224.p1, internal, 305703, 305764
-recovered pasa_asmbl_52224.p1, internal, 306010, 306202
-recovered pasa_asmbl_52224.p1, internal, 306353, 306481
-recovered pasa_asmbl_52224.p1, internal, 306649, 306754
-recovered pasa_asmbl_52224.p1, internal, 306950, 307081
Valid prediction for HiQ_model.g14027.t1
Valid prediction for HiQ_model.g14033.t1
Valid prediction for GeneMark_model.35741_t
Valid prediction for GeneMark_model.35759_t
Valid prediction for GeneMark_model.35744_t
Valid prediction for snap_scaffold_8-snap.2119-T1
Valid prediction for Augustus_model.g14038.t1
Valid prediction for snap_scaffold_8-snap.2133-T1
Valid prediction for GeneMark_model.35753_t
Valid prediction for GeneMark_model.35733_t
Couldn't classify 301043, 301377
Couldn't classify 304364, 304429
Sorry, prediction pasa_asmbl_52220.p1 fails validation.
(CTG)	 TG	301043-301377	GT	AAG
(GTT)	 AG	301593-301692	GT	AGG
(GTC)	 AG	301999-302211	GT	TGG
(CCA)	 AG	303313-303413	GT	AGG
(GGT)	 AG	303589-303719	GT	GGG
(GAC)	 AG	303870-304090	GT	AGG
(ATC)	 AG	304364-304429	CT	CCC
-recovered pasa_asmbl_52220.p1, internal, 301593, 301692
-recovered pasa_asmbl_52220.p1, internal, 301999, 302211
-recovered pasa_asmbl_52220.p1, internal, 303313, 303413
-recovered pasa_asmbl_52220.p1, internal, 303589, 303719
-recovered pasa_asmbl_52220.p1, internal, 303870, 304090
Valid prediction for GeneMark_model.35755_t
Valid prediction for GeneMark_model.35727_t
Valid prediction for snap_scaffold_8-snap.2128-T1
Valid prediction for snap_scaffold_8-snap.2121-T1
Valid prediction for GlimmerHMM_glimmerT_20945-T1
Valid prediction for GlimmerHMM_glimmerT_20938-T1
Valid prediction for snap_scaffold_8-snap.2144-T1
Valid prediction for GeneMark_model.35736_t
Valid prediction for GlimmerHMM_glimmerT_20939-T1
Valid prediction for pasa_asmbl_52209.p1
Valid prediction for GlimmerHMM_glimmerT_20932-T1
Valid prediction for Augustus_model.g14030.t1
Valid prediction for CodingQuarry_transcript_59673-T1
Valid prediction for GeneMark_model.35732_t
Valid prediction for snap_scaffold_8-snap.2153-T1
Couldn't classify 82015, 82190
Sorry, prediction pasa_asmbl_52620.p1 fails validation.
(ATG)	 AC	80311-80334	GT	AGG
(AAT)	 AG	81650-81770	GT	TGG
(GCT)	 AG	82015-82190	TA	CCT
-recovered pasa_asmbl_52620.p1, initial, 80311, 80334
-recovered pasa_asmbl_52620.p1, internal, 81650, 81770
Valid prediction for snap_scaffold_8-snap.2120-T1
Couldn't classify 298933, 299018
Couldn't classify 299515, 300058
Sorry, prediction pasa_asmbl_52218.p1 fails validation.
(CAC)	 GT	298933-299018	GT	AGG
(CTT)	 AG	299515-300058	CC	CCC
Valid prediction for GlimmerHMM_glimmerT_20924-T1
Valid prediction for snap_scaffold_8-snap.2129-T1
Valid prediction for Augustus_model.g14032.t1
Valid prediction for GeneMark_model.35734_t
Valid prediction for GeneMark_model.35730_t
Valid prediction for GeneMark_model.35743_t
Valid prediction for snap_scaffold_8-snap.2152-T1
Valid prediction for snap_scaffold_8-snap.2141-T1
Valid prediction for Augustus_model.g14036.t1
Valid prediction for GlimmerHMM_glimmerT_20934-T1
Valid prediction for GeneMark_model.35756_t
Valid prediction for snap_scaffold_8-snap.2131-T1
Valid prediction for snap_scaffold_8-snap.2143-T1
Valid prediction for CodingQuarry_transcript_59671-T1
Valid prediction for snap_scaffold_8-snap.2142-T1
Valid prediction for snap_scaffold_8-snap.2118-T1
Valid prediction for snap_scaffold_8-snap.2150-T1
Valid prediction for Augustus_model.g14031.t1
Valid prediction for GlimmerHMM_glimmerT_20941-T1
Valid prediction for CodingQuarry_transcript_59674-T1
Valid prediction for snap_scaffold_8-snap.2117-T1
Valid prediction for snap_scaffold_8-snap.2123-T1
Valid prediction for GeneMark_model.35760_t
Valid prediction for HiQ_model.g14043.t1
Couldn't classify 349978, 350178
Couldn't classify 351258, 351299
Sorry, prediction pasa_asmbl_52235.p1 fails validation.
(TGT)	 CA	349978-350178	GT	AGG
(GAA)	 AG	350892-350975	GT	AGG
(GTG)	 AG	351258-351299	CT	ACC
-recovered pasa_asmbl_52235.p1, internal, 350892, 350975
Valid prediction for snap_scaffold_8-snap.2139-T1
Valid prediction for pasa_asmbl_52222.p1
Valid prediction for CodingQuarry_transcript_59668-T1
Couldn't classify 347955, 348123
Couldn't classify 349176, 349253
Sorry, prediction pasa_asmbl_52234.p1 fails validation.
(ACG)	 GC	347955-348123	GT	AGG
(CCC)	 AG	348296-348451	GT	AGG
(GAG)	 AG	348710-348816	GT	AGG
(GTG)	 AG	348925-349035	GT	AGG
(GGA)	 AG	349176-349253	GT	TGG
-recovered pasa_asmbl_52234.p1, internal, 348296, 348451
-recovered pasa_asmbl_52234.p1, internal, 348710, 348816
-recovered pasa_asmbl_52234.p1, internal, 348925, 349035
-recovered pasa_asmbl_52234.p1, internal, 349176, 349253
Valid prediction for GlimmerHMM_glimmerT_20927-T1
Couldn't classify 341562, 341677
Couldn't classify 342315, 342446
Sorry, prediction pasa_asmbl_52591.p1 fails validation.
(GAT)	 TA	341562-341677	GT	AGG
(GTA)	 AG	341931-342051	GT	GGG
(ATT)	 AG	342315-342446	GA	AGG
-recovered pasa_asmbl_52591.p1, internal, 341931, 342051
Couldn't classify 124764, 124793
Sorry, prediction pasa_asmbl_52211.p1 fails validation.
(ATG)	 CC	120717-120799	GT	CAG
(ATA)	 AG	121187-121368	GT	AGG
(ATG)	 AG	121652-121782	GC	AGG
(GCC)	 AG	121899-122117	GT	TGG
(GTG)	 AG	122288-122366	GT	AGG
(AGG)	 AG	122454-122556	GT	AGG
(TGT)	 AG	122733-122948	GT	AAG
(GTT)	 AG	123074-123203	GT	AGG
(TGG)	 AG	123574-123761	GT	AGG
(AGT)	 AG	123997-124121	GT	AGG
(ATC)	 AG	124321-124412	GT	AGG
(TCA)	 AG	124764-124793	GC	GAG
-recovered pasa_asmbl_52211.p1, initial, 120717, 120799
add_exon() Sorry, pasa_asmbl_52211.p1 121652-121782-initial-1 is invalid.
-recovered pasa_asmbl_52211.p1, initial, 121652, 121782
-recovered pasa_asmbl_52211.p1, internal, 121187, 121368
-recovered pasa_asmbl_52211.p1, internal, 121652, 121782
-recovered pasa_asmbl_52211.p1, internal, 121899, 122117
-recovered pasa_asmbl_52211.p1, internal, 122288, 122366
-recovered pasa_asmbl_52211.p1, internal, 122454, 122556
-recovered pasa_asmbl_52211.p1, internal, 122733, 122948
-recovered pasa_asmbl_52211.p1, internal, 123074, 123203
-recovered pasa_asmbl_52211.p1, internal, 123574, 123761
-recovered pasa_asmbl_52211.p1, internal, 123997, 124121
-recovered pasa_asmbl_52211.p1, internal, 124321, 124412
-recovered pasa_asmbl_52211.p1, internal, 124764, 124793
Valid prediction for GeneMark_model.35751_t
Valid prediction for snap_scaffold_8-snap.2154-T1
Valid prediction for pasa_asmbl_52204.p1
Valid prediction for Augustus_model.g14045.t1
Valid prediction for GeneMark_model.35728_t
Valid prediction for CodingQuarry_transcript_59666-T1
Valid prediction for pasa_asmbl_52225.p1
Couldn't classify 313379, 313499
Couldn't classify 313891, 313979
Sorry, prediction CodingQuarry_transcript_59672-T1 fails validation.
(ATG)	 CA	311956-312012	GT	AGG
(GAT)	 AG	312469-312543	GT	TGG
(GGG)	 AG	312720-312803	GT	AGG
(GTT)	 AG	313145-313265	GT	AGG
(CTC)	 AG	313379-313499	AT	CTA
(GTG)	 GG	313891-313979	GC	AGG
(GTC)	 AG	314134-314189	CA	AGC
-recovered CodingQuarry_transcript_59672-T1, initial, 311956, 312012
-recovered CodingQuarry_transcript_59672-T1, terminal, 314134, 314189
-recovered CodingQuarry_transcript_59672-T1, internal, 312469, 312543
-recovered CodingQuarry_transcript_59672-T1, internal, 312720, 312803
-recovered CodingQuarry_transcript_59672-T1, internal, 313145, 313265
Valid prediction for Augustus_model.g14040.t1
Valid prediction for GlimmerHMM_glimmerT_20936-T1
Valid prediction for snap_scaffold_8-snap.2125-T1
Couldn't classify 300491, 300862
Sorry, prediction pasa_asmbl_52219.p1 fails validation.
(CTT)	 CT	300491-300862	AG	AGA
Valid prediction for pasa_asmbl_52199.p1
Valid prediction for GlimmerHMM_glimmerT_20930-T1
Valid prediction for snap_scaffold_8-snap.2116-T1
Valid prediction for snap_scaffold_8-snap.2136-T1
Valid prediction for GlimmerHMM_glimmerT_20937-T1
Valid prediction for snap_scaffold_8-snap.2135-T1
Valid prediction for snap_scaffold_8-snap.2149-T1
Valid prediction for snap_scaffold_8-snap.2127-T1
Valid prediction for snap_scaffold_8-snap.2124-T1
Valid prediction for Augustus_model.g14041.t1
Valid prediction for snap_scaffold_8-snap.2132-T1
Valid prediction for snap_scaffold_8-snap.2147-T1
Couldn't classify 356539, 356753
Couldn't classify 357359, 357504
Sorry, prediction pasa_asmbl_52240.p1 fails validation.
(GCC)	 AG	356539-356753	GT	AGG
(GTA)	 AG	356853-356905	GT	GGG
(AGG)	 AG	356988-357188	GT	AGG
(GAT)	 AG	357359-357504	AT	TCA
add_exon() Sorry, pasa_asmbl_52240.p1 356988-357188-terminal-1 is invalid.
-recovered pasa_asmbl_52240.p1, terminal, 356988, 357188
-recovered pasa_asmbl_52240.p1, internal, 356539, 356753
-recovered pasa_asmbl_52240.p1, internal, 356853, 356905
-recovered pasa_asmbl_52240.p1, internal, 356988, 357188
Couldn't classify 92814, 94160
Couldn't classify 96778, 96921
Sorry, prediction pasa_asmbl_52590.p1 fails validation.
(TCT)	 AA	92814-94160	GT	CAG
(TGT)	 AG	94821-94973	GT	AGG
(TGC)	 AG	95160-95333	GT	AGG
(TGC)	 AG	95494-95640	GT	AGG
(TGC)	 AG	96778-96921	TG	AGT
-recovered pasa_asmbl_52590.p1, internal, 94821, 94973
-recovered pasa_asmbl_52590.p1, internal, 95160, 95333
-recovered pasa_asmbl_52590.p1, internal, 95494, 95640
Valid prediction for GlimmerHMM_glimmerT_20942-T1
Valid prediction for snap_scaffold_8-snap.2145-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_59664-T1
Valid prediction for Augustus_model.g14025.t1
Valid prediction for snap_scaffold_8-snap.2140-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GeneMark_model.35761_t
Valid prediction for GeneMark_model.35750_t
Valid prediction for snap_scaffold_8-snap.2114-T1
Valid prediction for GlimmerHMM_glimmerT_20929-T1
Valid prediction for pasa_asmbl_53137.p1
Valid prediction for GlimmerHMM_glimmerT_20940-T1
Valid prediction for GeneMark_model.35752_t
Valid prediction for GlimmerHMM_glimmerT_20923-T1
Valid prediction for HiQ_model.g14022.t1
Valid prediction for GeneMark_model.35739_t
Valid prediction for CodingQuarry_transcript_59663-T1
Valid prediction for CodingQuarry_transcript_59661-T1
Valid prediction for GlimmerHMM_glimmerT_20925-T1
Valid prediction for GlimmerHMM_glimmerT_20935-T1
Valid prediction for GeneMark_model.35746_t
Valid prediction for Augustus_model.g14039.t1
Valid prediction for snap_scaffold_8-snap.2155-T1
Valid prediction for GeneMark_model.35725_t
Valid prediction for GeneMark_model.35724_t
Valid prediction for GlimmerHMM_glimmerT_20922-T1
Couldn't classify 359469, 359634
Sorry, prediction pasa_asmbl_53135.p1 fails validation.
(GGA)	 AA	359469-359634	GT	TGG
(GAG)	 AG	361291-361469	GT	AGG
(AGC)	 AG	361879-361992	GT	TGG
(ACA)	 AG	364355-364405	CA	AAC
-recovered pasa_asmbl_53135.p1, terminal, 364355, 364405
-recovered pasa_asmbl_53135.p1, internal, 361291, 361469
-recovered pasa_asmbl_53135.p1, internal, 361879, 361992
Valid prediction for GlimmerHMM_glimmerT_20933-T1
Valid prediction for GeneMark_model.35737_t
Valid prediction for Augustus_model.g14023.t1
Valid prediction for GeneMark_model.35757_t
Valid prediction for CodingQuarry_transcript_59665-T1
Valid prediction for snap_scaffold_8-snap.2115-T1
Valid prediction for GeneMark_model.35748_t
Valid prediction for CodingQuarry_transcript_59662-T1
Valid prediction for GeneMark_model.35754_t
Valid prediction for GeneMark_model.35740_t
Valid prediction for snap_scaffold_8-snap.2146-T1
Valid prediction for Augustus_model.g14035.t1
Valid prediction for GeneMark_model.35738_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 301381, rend_intergenic: 293427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 342494, rend_intergenic: 336859  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 366969
-exon list size: 581


building trellis

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42.7    
42.9    
43.1    
43.2    
43.4    
43.6    
43.7    
43.9    
44.1    
44.3    
44.4    
44.6    
44.8    
44.9    
45.1    
45.3    
45.5    
45.6    
45.8    
46.0    
46.1    
46.3    
46.5    
46.7    
46.8    
47.0    
47.2    
47.3    
47.5    
47.7    
47.9    
48.0    
48.2    
48.4    
48.5    
48.7    
48.9    
49.1    
49.2    
49.4    
49.6    
49.7    
49.9    
50.1    
50.3    
50.4    
50.6    
50.8    
50.9    
51.1    
51.3    
51.5    
51.6    
51.8    
52.0    
52.1    
52.3    
52.5    
52.7    
52.8    
53.0    
53.2    
53.3    
53.5    
53.7    
53.9    
54.0    
54.2    
54.4    
54.5    
54.7    
54.9    
55.1    
55.2    
55.4    
55.6    
55.7    
55.9    
56.1    
56.3    
56.4    
56.6    
56.8    
56.9    
57.1    
57.3    
57.5    
57.6    
57.8    
58.0    
58.1    
58.3    
58.5    
58.7    
58.8    
59.0    
59.2    
59.3    
59.5    
59.7    
59.9    
60.0    
60.2    
60.4    
60.5    
60.7    
60.9    
61.1    
61.2    
61.4    
61.6    
61.7    
61.9    
62.1    
62.3    
62.4    
62.6    
62.8    
63.0    
63.1    
63.3    
63.5    
63.6    
63.8    
64.0    
64.2    
64.3    
64.5    
64.7    
64.8    
65.0    
65.2    
65.4    
65.5    
65.7    
65.9    
66.0    
66.2    
66.4    
66.6    
66.7    
66.9    
67.1    
67.2    
67.4    
67.6    
67.8    
67.9    
68.1    
68.3    
68.4    
68.6    
68.8    
69.0    
69.1    
69.3    
69.5    
69.6    
69.8    
70.0    
70.2    
70.3    
70.5    
70.7    
70.8    
71.0    
71.2    
71.4    
71.5    
71.7    
71.9    
72.0    
72.2    
72.4    
72.6    
72.7    
72.9    
73.1    
73.2    
73.4    
73.6    
73.8    
73.9    
74.1    
74.3    
74.4    
74.6    
74.8    
75.0    
75.1    
75.3    
75.5    
75.6    
75.8    
76.0    
76.2    
76.3    
76.5    
76.7    
76.8    
77.0    
77.2    
77.4    
77.5    
77.7    
77.9    
78.0    
78.2    
78.4    
78.6    
78.7    
78.9    
79.1    
79.2    
79.4    
79.6    
79.8    
79.9    
80.1    
80.3    
80.4    
80.6    
80.8    
81.0    
81.1    
81.3    
81.5    
81.6    
81.8    
82.0    
82.2    
82.3    
82.5    
82.7    
82.8    
83.0    
83.2    
83.4    
83.5    
83.7    
83.9    
84.0    
84.2    
84.4    
84.6    
84.7    
84.9    
85.1    
85.2    
85.4    
85.6    
85.8    
85.9    
86.1    
86.3    
86.4    
86.6    
86.8    
87.0    
87.1    
87.3    
87.5    
87.7    
87.8    
88.0    
88.2    
88.3    
88.5    
88.7    
88.9    
89.0    
89.2    
89.4    
89.5    
89.7    
89.9    
90.1    
90.2    
90.4    
90.6    
90.7    
90.9    
91.1    
91.3    
91.4    
91.6    
91.8    
91.9    
92.1    
92.3    
92.5    
92.6    
92.8    
93.0    
93.1    
93.3    
93.5    
93.7    
93.8    
94.0    
94.2    
94.3    
94.5    
94.7    
94.9    
95.0    
95.2    
95.4    
95.5    
95.7    
95.9    
96.1    
96.2    
96.4    
96.6    
96.7    
96.9    
97.1    
97.3    
97.4    
97.6    
97.8    
97.9    
98.1    
98.3    
98.5    
98.6    
98.8    
99.0    
99.1    
99.3    
99.5    
99.7    
99.8    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 301381, rend_intergenic: 293427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 342494, rend_intergenic: 336859  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 27 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 342487 - 366969
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 349254 - 366969
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support