-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_10706583-11260429 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 351776, 351975 Sorry, prediction pasa_asmbl_52183.p1 fails validation. (GAG) TA 351776-351975 GT GGG (GCA) AG 352297-352402 GT GGG (GTG) AG 352765-352961 GT GAG (CGT) AG 353341-353507 GT TGG (GAG) AG 353638-353798 AT AGA -recovered pasa_asmbl_52183.p1, terminal, 353638, 353798 -recovered pasa_asmbl_52183.p1, internal, 352297, 352402 -recovered pasa_asmbl_52183.p1, internal, 352765, 352961 -recovered pasa_asmbl_52183.p1, internal, 353341, 353507 Valid prediction for CodingQuarry_transcript_59652-T1 Valid prediction for snap_scaffold_8-snap.2091-T1 Valid prediction for GeneMark_model.35687_t Valid prediction for GeneMark_model.35690_t Valid prediction for snap_scaffold_8-snap.2112-T1 Valid prediction for snap_scaffold_8-snap.2108-T1 Valid prediction for CodingQuarry_transcript_59654-T1 Couldn't classify 543495, 543599 Sorry, prediction pasa_asmbl_52197.p1 fails validation. (GTT) CT 543495-543599 GT AGG (AAG) AG 543743-543895 GT TGG (CTT) AG 544047-544202 GT AGG (AAG) AG 544383-544469 GT AGG (GTG) AG 544668-544786 GT GGG (GAA) AG 544966-545176 GT AGG (GTT) AG 545284-545400 GT AGG (CTG) AG 545569-545807 GT AGG (GTT) AG 545913-546096 GT AGG (CGC) AG 546299-546881 GT TAG (TGG) AG 546992-547161 GT AGG (CTC) AG 547458-547631 GT AGG (CTG) AG 547889-547981 GT AGG (CGG) AG 548520-548618 GG GAG -recovered pasa_asmbl_52197.p1, terminal, 548520, 548618 -recovered pasa_asmbl_52197.p1, internal, 543743, 543895 -recovered pasa_asmbl_52197.p1, internal, 544047, 544202 -recovered pasa_asmbl_52197.p1, internal, 544383, 544469 -recovered pasa_asmbl_52197.p1, internal, 544668, 544786 -recovered pasa_asmbl_52197.p1, internal, 544966, 545176 -recovered pasa_asmbl_52197.p1, internal, 545284, 545400 -recovered pasa_asmbl_52197.p1, internal, 545569, 545807 -recovered pasa_asmbl_52197.p1, internal, 545913, 546096 -recovered pasa_asmbl_52197.p1, internal, 546299, 546881 -recovered pasa_asmbl_52197.p1, internal, 546992, 547161 -recovered pasa_asmbl_52197.p1, internal, 547458, 547631 -recovered pasa_asmbl_52197.p1, internal, 547889, 547981 Valid prediction for snap_scaffold_8-snap.2105-T1 Valid prediction for snap_scaffold_8-snap.2077-T1 Valid prediction for Augustus_model.g14014.t1 Valid prediction for GeneMark_model.35697_t Valid prediction for GlimmerHMM_glimmerT_20894-T1 Valid prediction for HiQ_model.g14012.t1 Valid prediction for Augustus_model.g13997.t1 Valid prediction for snap_scaffold_8-snap.2082-T1 Valid prediction for snap_scaffold_8-snap.2073-T1 Valid prediction for HiQ_model.g14021.t1 Valid prediction for snap_scaffold_8-snap.2101-T1 Valid prediction for GlimmerHMM_glimmerT_20909-T1 Valid prediction for GeneMark_model.35723_t Valid prediction for GlimmerHMM_glimmerT_20913-T1 Valid prediction for snap_scaffold_8-snap.2111-T1 Valid prediction for GeneMark_model.35701_t Couldn't classify 63128, 63167 Sorry, prediction pasa_asmbl_52167.p1 fails validation. (AAA) TG 63128-63167 GT GAG (GCT) AG 64010-64093 GT CGG (ACT) AG 64348-64532 CT AAC -recovered pasa_asmbl_52167.p1, terminal, 64348, 64532 -recovered pasa_asmbl_52167.p1, internal, 64010, 64093 Valid prediction for Augustus_model.g13994.t1 Valid prediction for GlimmerHMM_glimmerT_20906-T1 Valid prediction for snap_scaffold_8-snap.2093-T1 Valid prediction for Augustus_model.g14016.t1 Couldn't classify 543348, 543383 Sorry, prediction pasa_asmbl_52195.p1 fails validation. (ATG) CA 541929-542114 GT AGG (GTT) AG 542367-542549 GT AGG (GTT) AG 542666-542772 GT AGG (TAT) AG 542908-543217 GT AGG (CCG) AG 543348-543383 CC AGC -recovered pasa_asmbl_52195.p1, initial, 541929, 542114 -recovered pasa_asmbl_52195.p1, internal, 542367, 542549 -recovered pasa_asmbl_52195.p1, internal, 542666, 542772 -recovered pasa_asmbl_52195.p1, internal, 542908, 543217 Valid prediction for GeneMark_model.35706_t Valid prediction for snap_scaffold_8-snap.2075-T1 Valid prediction for GeneMark_model.35705_t Valid prediction for GlimmerHMM_glimmerT_20901-T1 Valid prediction for GeneMark_model.35716_t Valid prediction for GeneMark_model.35713_t Valid prediction for GeneMark_model.35689_t Valid prediction for snap_scaffold_8-snap.2081-T1 Valid prediction for snap_scaffold_8-snap.2072-T1 Valid prediction for pasa_asmbl_52189.p1 Valid prediction for HiQ_model.g14008.t1 Couldn't classify 487259, 487361 Couldn't classify 488044, 488167 Sorry, prediction CodingQuarry_transcript_59660-T1 fails validation. (ATG) CG 473109-473169 GT AGG (GCC) AG 474058-474206 GT AGG (GGT) AG 474320-474436 GT AGG (GAC) AG 474568-474789 GT AGG (GAT) AG 474983-475097 GT AGG (TCC) AG 475442-475539 GT AGG (CAA) AG 475890-476048 GT AGG (ACC) AG 476299-476382 GT AAG (CTC) AG 476781-476897 GT AGG (TTG) AG 477379-477481 GT AGG (GAC) AG 478306-478381 GT AGG (AGT) AG 478737-478845 GT AGG (ATC) AG 479449-479627 GT AGG (CAC) AG 479952-480112 GT CGG (AGA) AG 480284-480391 GT AGG (GTG) AG 480609-480816 GT AGG (TCT) AG 481077-481172 GT AGG (GAG) AG 481481-481592 GT AGG (GCC) AG 483315-483438 GT AGG (TCC) AG 483643-483807 GT TGG (GTA) AG 484217-484311 GT CAG (GTG) AG 485091-485261 GT AGG (ATA) AG 485803-485912 GT AGG (CGC) AG 486277-486446 GT CGG (GTC) AG 487259-487361 AT TTA (CTG) AC 488044-488167 GT AGG (ATT) AG 488351-488434 CC AGC -recovered CodingQuarry_transcript_59660-T1, initial, 473109, 473169 -recovered CodingQuarry_transcript_59660-T1, terminal, 488351, 488434 -recovered CodingQuarry_transcript_59660-T1, internal, 474058, 474206 -recovered CodingQuarry_transcript_59660-T1, internal, 474320, 474436 -recovered CodingQuarry_transcript_59660-T1, internal, 474568, 474789 -recovered CodingQuarry_transcript_59660-T1, internal, 474983, 475097 -recovered CodingQuarry_transcript_59660-T1, internal, 475442, 475539 -recovered CodingQuarry_transcript_59660-T1, internal, 475890, 476048 -recovered CodingQuarry_transcript_59660-T1, internal, 476299, 476382 -recovered CodingQuarry_transcript_59660-T1, internal, 476781, 476897 -recovered CodingQuarry_transcript_59660-T1, internal, 477379, 477481 -recovered CodingQuarry_transcript_59660-T1, internal, 478306, 478381 -recovered CodingQuarry_transcript_59660-T1, internal, 478737, 478845 -recovered CodingQuarry_transcript_59660-T1, internal, 479449, 479627 -recovered CodingQuarry_transcript_59660-T1, internal, 479952, 480112 -recovered CodingQuarry_transcript_59660-T1, internal, 480284, 480391 -recovered CodingQuarry_transcript_59660-T1, internal, 480609, 480816 -recovered CodingQuarry_transcript_59660-T1, internal, 481077, 481172 -recovered CodingQuarry_transcript_59660-T1, internal, 481481, 481592 -recovered CodingQuarry_transcript_59660-T1, internal, 483315, 483438 -recovered CodingQuarry_transcript_59660-T1, internal, 483643, 483807 -recovered CodingQuarry_transcript_59660-T1, internal, 484217, 484311 -recovered CodingQuarry_transcript_59660-T1, internal, 485091, 485261 -recovered CodingQuarry_transcript_59660-T1, internal, 485803, 485912 -recovered CodingQuarry_transcript_59660-T1, internal, 486277, 486446 Valid prediction for GeneMark_model.35718_t Valid prediction for HiQ_model.g14020.t1 Valid prediction for GlimmerHMM_glimmerT_20908-T1 Valid prediction for snap_scaffold_8-snap.2074-T1 Valid prediction for snap_scaffold_8-snap.2106-T1 Valid prediction for CodingQuarry_transcript_59658-T1 Valid prediction for GlimmerHMM_glimmerT_20921-T1 Valid prediction for HiQ_model.g14018.t1 Valid prediction for GeneMark_model.35704_t Valid prediction for GlimmerHMM_glimmerT_20897-T1 Valid prediction for GlimmerHMM_glimmerT_20911-T1 Valid prediction for GlimmerHMM_glimmerT_20917-T1 Valid prediction for GlimmerHMM_glimmerT_20916-T1 Valid prediction for GeneMark_model.35688_t Couldn't classify 487259, 487361 Couldn't classify 488044, 488167 Sorry, prediction pasa_asmbl_52190.p1 fails validation. (ATG) CG 473109-473169 GT AGG (GCC) AG 474058-474206 GT AGG (GGT) AG 474320-474436 GT AGG (GAC) AG 474568-474789 GT AGG (GAT) AG 474983-475097 GT AGG (TCC) AG 475442-475539 GT AGG (CAA) AG 475890-476048 GT AGG (ACC) AG 476299-476382 GT AAG (CTC) AG 476781-476897 GT AGG (TTG) AG 477379-477481 GT AGG (GAC) AG 478306-478381 GT AGG (AGT) AG 478737-478845 GT AGG (ATC) AG 479449-479627 GT AGG (CAC) AG 479952-480112 GT CGG (AGA) AG 480284-480391 GT AGG (GTG) AG 480609-480816 GT AGG (TCT) AG 481077-481172 GT AGG (GAG) AG 481481-481592 GT AGG (GCC) AG 483315-483438 GT AGG (TCC) AG 483643-483807 GT TGG (GTA) AG 484217-484311 GT CAG (GTG) AG 485091-485261 GT AGG (ATA) AG 485803-485912 GT AGG (CGC) AG 486277-486446 GT CGG (GTC) AG 487259-487361 AT TTA (CTG) AC 488044-488167 GT AGG (ATT) AG 488351-488434 CC AGC -recovered pasa_asmbl_52190.p1, initial, 473109, 473169 -recovered pasa_asmbl_52190.p1, terminal, 488351, 488434 -recovered pasa_asmbl_52190.p1, internal, 474058, 474206 -recovered pasa_asmbl_52190.p1, internal, 474320, 474436 -recovered pasa_asmbl_52190.p1, internal, 474568, 474789 -recovered pasa_asmbl_52190.p1, internal, 474983, 475097 -recovered pasa_asmbl_52190.p1, internal, 475442, 475539 -recovered pasa_asmbl_52190.p1, internal, 475890, 476048 -recovered pasa_asmbl_52190.p1, internal, 476299, 476382 -recovered pasa_asmbl_52190.p1, internal, 476781, 476897 -recovered pasa_asmbl_52190.p1, internal, 477379, 477481 -recovered pasa_asmbl_52190.p1, internal, 478306, 478381 -recovered pasa_asmbl_52190.p1, internal, 478737, 478845 -recovered pasa_asmbl_52190.p1, internal, 479449, 479627 -recovered pasa_asmbl_52190.p1, internal, 479952, 480112 -recovered pasa_asmbl_52190.p1, internal, 480284, 480391 -recovered pasa_asmbl_52190.p1, internal, 480609, 480816 -recovered pasa_asmbl_52190.p1, internal, 481077, 481172 -recovered pasa_asmbl_52190.p1, internal, 481481, 481592 -recovered pasa_asmbl_52190.p1, internal, 483315, 483438 -recovered pasa_asmbl_52190.p1, internal, 483643, 483807 -recovered pasa_asmbl_52190.p1, internal, 484217, 484311 -recovered pasa_asmbl_52190.p1, internal, 485091, 485261 -recovered pasa_asmbl_52190.p1, internal, 485803, 485912 -recovered pasa_asmbl_52190.p1, internal, 486277, 486446 Couldn't classify 461580, 461766 Sorry, prediction pasa_asmbl_52188.p1 fails validation. (GAA) CT 461580-461766 GT AGG (ACC) AG 461962-463022 AG AGA -recovered pasa_asmbl_52188.p1, terminal, 461962, 463022 Valid prediction for snap_scaffold_8-snap.2071-T1 Valid prediction for pasa_asmbl_52177.p1 Valid prediction for GlimmerHMM_glimmerT_20915-T1 Valid prediction for GeneMark_model.35721_t Couldn't classify 533093, 533276 Sorry, prediction pasa_asmbl_52194.p1 fails validation. (GGT) AC 533093-533276 GT CGG (CTA) AG 535447-535570 GT GGG (ATC) AG 535659-535766 GT AGG (GCT) AG 536202-536333 GT AGG (AGA) AG 536614-536789 GT AGG (GAG) AG 536911-537108 GT TGG (CCA) AG 537516-537661 GT AGG (GAG) AG 537758-537790 AG AGA -recovered pasa_asmbl_52194.p1, terminal, 537758, 537790 -recovered pasa_asmbl_52194.p1, internal, 535447, 535570 -recovered pasa_asmbl_52194.p1, internal, 535659, 535766 -recovered pasa_asmbl_52194.p1, internal, 536202, 536333 -recovered pasa_asmbl_52194.p1, internal, 536614, 536789 -recovered pasa_asmbl_52194.p1, internal, 536911, 537108 -recovered pasa_asmbl_52194.p1, internal, 537516, 537661 Valid prediction for Augustus_model.g13993.t1 Valid prediction for snap_scaffold_8-snap.2103-T1 Valid prediction for CodingQuarry_transcript_59653-T1 Valid prediction for HiQ_model.g14006.t1 Valid prediction for Augustus_model.g14005.t1 Valid prediction for GeneMark_model.35703_t Valid prediction for HiQ_model.g14001.t1 Valid prediction for GlimmerHMM_glimmerT_20892-T1 Valid prediction for pasa_asmbl_52184.p1 Valid prediction for GeneMark_model.35712_t Valid prediction for snap_scaffold_8-snap.2107-T1 Valid prediction for GeneMark_model.35717_t Valid prediction for snap_scaffold_8-snap.2069-T1 Valid prediction for pasa_asmbl_52170.p1 Couldn't classify 51941, 52261 Sorry, prediction pasa_asmbl_52166.p1 fails validation. (CTA) AC 51941-52261 TT AGT Valid prediction for snap_scaffold_8-snap.2090-T1 Valid prediction for snap_scaffold_8-snap.2089-T1 Valid prediction for GlimmerHMM_glimmerT_20920-T1 Valid prediction for snap_scaffold_8-snap.2113-T1 Valid prediction for pasa_asmbl_52173.p1 Valid prediction for HiQ_model.g14017.t1 Valid prediction for GlimmerHMM_glimmerT_20895-T1 Valid prediction for GeneMark_model.35722_t Valid prediction for HiQ_model.g13995.t1 Valid prediction for GlimmerHMM_glimmerT_20907-T1 Valid prediction for GeneMark_model.35711_t Valid prediction for GlimmerHMM_glimmerT_20896-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_20902-T1 Valid prediction for Augustus_model.g14000.t1 Couldn't classify 169162, 169211 Couldn't classify 169366, 169654 Sorry, prediction pasa_asmbl_53637.p1 fails validation. (AAG) AA 169162-169211 GT AGG (ACA) AG 169366-169654 GC AGG -recovered pasa_asmbl_53637.p1, internal, 169366, 169654 Valid prediction for snap_scaffold_8-snap.2092-T1 Valid prediction for snap_scaffold_8-snap.2095-T1 Valid prediction for snap_scaffold_8-snap.2086-T1 Valid prediction for Augustus_model.g14010.t1 Valid prediction for GeneMark_model.35695_t Valid prediction for Augustus_model.g14019.t1 Valid prediction for snap_scaffold_8-snap.2100-T1 Valid prediction for GlimmerHMM_glimmerT_20910-T1 Valid prediction for GeneMark_model.35694_t Valid prediction for snap_scaffold_8-snap.2085-T1 Valid prediction for GlimmerHMM_glimmerT_20912-T1 Valid prediction for GlimmerHMM_glimmerT_20914-T1 Valid prediction for snap_scaffold_8-snap.2083-T1 Valid prediction for GlimmerHMM_glimmerT_20893-T1 Valid prediction for GeneMark_model.35700_t Valid prediction for snap_scaffold_8-snap.2110-T1 Valid prediction for snap_scaffold_8-snap.2068-T1 Valid prediction for snap_scaffold_8-snap.2096-T1 Valid prediction for pasa_asmbl_53129.p1 Valid prediction for GeneMark_model.35720_t Valid prediction for snap_scaffold_8-snap.2104-T1 Valid prediction for CodingQuarry_transcript_59659-T1 Valid prediction for GlimmerHMM_glimmerT_20918-T1 Valid prediction for pasa_asmbl_53120.p1 Valid prediction for CodingQuarry_transcript_59655-T1 Valid prediction for snap_scaffold_8-snap.2084-T1 Valid prediction for CodingQuarry_transcript_59657-T1 Valid prediction for pasa_asmbl_53132.p1 Couldn't classify 391617, 391709 Couldn't classify 392654, 392794 Sorry, prediction pasa_asmbl_53124.p1 fails validation. (TCC) TC 391617-391709 GT GGG (AAC) AG 391963-392072 GT AGG (GCA) AG 392278-392425 GT CAG (ATG) AG 392654-392794 TA GGT -recovered pasa_asmbl_53124.p1, internal, 391963, 392072 -recovered pasa_asmbl_53124.p1, internal, 392278, 392425 Valid prediction for GlimmerHMM_glimmerT_20899-T1 Valid prediction for GeneMark_model.35708_t Valid prediction for snap_scaffold_8-snap.2078-T1 Couldn't classify 182901, 183010 Sorry, prediction pasa_asmbl_53126.p1 fails validation. (GGT) AA 182901-183010 GT AGG (TGA) AG 183259-183445 GT TGG (GAG) AG 183555-183705 GT AGG (ACC) AG 184027-184230 GT TGG (GAG) AG 187016-187119 GT AGG (AAG) AG 187312-187395 GT TGG (ATA) AG 187839-187991 GT TTG (GGT) AG 188238-188358 GT GGG (GTA) AG 189299-189419 GT AGG (GTA) AG 189594-189699 GT AGG (GTG) AG 189820-189930 GT CGG (AAT) AG 190041-190148 GT AGG (GTT) AG 190371-190535 GT AGG (TGT) AG 190788-190860 GT AGG (GTC) AG 191102-191208 GT AGG (GTT) AG 193731-193800 GT TGG (TTC) AG 195972-196018 GT TGG (GCG) AG 196469-196582 TA AGT -recovered pasa_asmbl_53126.p1, terminal, 196469, 196582 -recovered pasa_asmbl_53126.p1, internal, 183259, 183445 -recovered pasa_asmbl_53126.p1, internal, 183555, 183705 -recovered pasa_asmbl_53126.p1, internal, 184027, 184230 -recovered pasa_asmbl_53126.p1, internal, 187016, 187119 -recovered pasa_asmbl_53126.p1, internal, 187312, 187395 -recovered pasa_asmbl_53126.p1, internal, 187839, 187991 -recovered pasa_asmbl_53126.p1, internal, 188238, 188358 -recovered pasa_asmbl_53126.p1, internal, 189299, 189419 -recovered pasa_asmbl_53126.p1, internal, 189594, 189699 -recovered pasa_asmbl_53126.p1, internal, 189820, 189930 -recovered pasa_asmbl_53126.p1, internal, 190041, 190148 -recovered pasa_asmbl_53126.p1, internal, 190371, 190535 -recovered pasa_asmbl_53126.p1, internal, 190788, 190860 -recovered pasa_asmbl_53126.p1, internal, 191102, 191208 -recovered pasa_asmbl_53126.p1, internal, 193731, 193800 -recovered pasa_asmbl_53126.p1, internal, 195972, 196018 Valid prediction for GlimmerHMM_glimmerT_20919-T1 Valid prediction for snap_scaffold_8-snap.2070-T1 Valid prediction for snap_scaffold_8-snap.2099-T1 Valid prediction for snap_scaffold_8-snap.2094-T1 Valid prediction for snap_scaffold_8-snap.2080-T1 Valid prediction for GeneMark_model.35702_t Valid prediction for snap_scaffold_8-snap.2079-T1 Valid prediction for GeneMark_model.35691_t Valid prediction for Augustus_model.g14009.t1 Valid prediction for GlimmerHMM_glimmerT_20898-T1 Valid prediction for GeneMark_model.35698_t Valid prediction for GeneMark_model.35686_t Valid prediction for HiQ_model.g14015.t1 Valid prediction for GlimmerHMM_glimmerT_20905-T1 Valid prediction for GeneMark_model.35714_t Valid prediction for snap_scaffold_8-snap.2087-T1 Valid prediction for Augustus_model.g14013.t1 Valid prediction for GeneMark_model.35710_t Couldn't classify 177281, 177377 Couldn't classify 178339, 178520 Sorry, prediction pasa_asmbl_53128.p1 fails validation. (GGT) CA 177281-177377 GT CAG (ACG) AG 177543-177702 GT AGG (CAG) AG 177985-178085 GT AAG (GCG) AG 178339-178520 AG CCA -recovered pasa_asmbl_53128.p1, internal, 177543, 177702 -recovered pasa_asmbl_53128.p1, internal, 177985, 178085 Valid prediction for Augustus_model.g13998.t1 Valid prediction for Augustus_model.g14007.t1 Valid prediction for GeneMark_model.35692_t Couldn't classify 418838, 418885 Couldn't classify 421506, 421571 Sorry, prediction pasa_asmbl_53117.p1 fails validation. (GTT) TA 418838-418885 GT AGG (CTG) AG 419200-419275 GT TGG (AAA) AG 419867-419974 GT GGG (TAA) AG 420166-420230 GT GTG (TTC) AG 420353-420397 GT AGG (ATG) AG 420658-420692 GT AGG (AAA) AG 421030-421111 GT AGG (GCA) AG 421506-421571 GT AGG -recovered pasa_asmbl_53117.p1, initial, 420658, 420692 -recovered pasa_asmbl_53117.p1, internal, 419200, 419275 -recovered pasa_asmbl_53117.p1, internal, 419867, 419974 -recovered pasa_asmbl_53117.p1, internal, 420166, 420230 -recovered pasa_asmbl_53117.p1, internal, 420353, 420397 -recovered pasa_asmbl_53117.p1, internal, 420658, 420692 -recovered pasa_asmbl_53117.p1, internal, 421030, 421111 -recovered pasa_asmbl_53117.p1, internal, 421506, 421571 Valid prediction for Augustus_model.g13999.t1 Valid prediction for snap_scaffold_8-snap.2098-T1 Valid prediction for GlimmerHMM_glimmerT_20904-T1 Valid prediction for GeneMark_model.35685_t Couldn't classify 178835, 178920 Couldn't classify 181417, 181442 Sorry, prediction pasa_asmbl_53127.p1 fails validation. (GGT) AC 178835-178920 GT AAG (GGC) AG 179053-179183 GT CAG (GTA) AG 179284-179385 GT AGG (ATG) AG 180430-180450 GT GGG (TAT) AG 181417-181442 AT ACA -recovered pasa_asmbl_53127.p1, initial, 180430, 180450 -recovered pasa_asmbl_53127.p1, internal, 179053, 179183 -recovered pasa_asmbl_53127.p1, internal, 179284, 179385 -recovered pasa_asmbl_53127.p1, internal, 180430, 180450 Valid prediction for Augustus_model.g13996.t1 Valid prediction for GeneMark_model.35707_t Valid prediction for Augustus_model.g14004.t1 Valid prediction for snap_scaffold_8-snap.2076-T1 Valid prediction for HiQ_model.g14011.t1 Valid prediction for GeneMark_model.35715_t Valid prediction for GlimmerHMM_glimmerT_20900-T1 Valid prediction for GeneMark_model.35696_t Couldn't classify 504223, 504243 Sorry, prediction pasa_asmbl_53115.p1 fails validation. (GCT) TG 504223-504243 GT TGG (CTC) AG 505097-505139 GT AGG (CTC) AG 507148-507227 GT AGG (GCG) AG 507785-507848 GT AGG (CAC) AG 508041-508152 GT CTG (GTT) AG 508385-508457 GT GGG (GAG) AG 508535-508588 GT GCG (GCA) AG 508751-508878 GT GAG (ATA) AG 509419-509473 GT AAG (CTT) AG 509640-509708 GT CGG (GCC) AG 509809-509961 GT CAG (GCC) AG 510183-510354 GT TGG (TGG) AG 510597-510666 GT GAG (GTC) AG 510819-510957 GT AGG (CTC) AG 511197-511407 GT AGG (GAA) AG 511632-511795 CC AGC -recovered pasa_asmbl_53115.p1, terminal, 511632, 511795 -recovered pasa_asmbl_53115.p1, internal, 505097, 505139 -recovered pasa_asmbl_53115.p1, internal, 507148, 507227 -recovered pasa_asmbl_53115.p1, internal, 507785, 507848 -recovered pasa_asmbl_53115.p1, internal, 508041, 508152 -recovered pasa_asmbl_53115.p1, internal, 508385, 508457 -recovered pasa_asmbl_53115.p1, internal, 508535, 508588 -recovered pasa_asmbl_53115.p1, internal, 508751, 508878 -recovered pasa_asmbl_53115.p1, internal, 509419, 509473 -recovered pasa_asmbl_53115.p1, internal, 509640, 509708 -recovered pasa_asmbl_53115.p1, internal, 509809, 509961 -recovered pasa_asmbl_53115.p1, internal, 510183, 510354 -recovered pasa_asmbl_53115.p1, internal, 510597, 510666 -recovered pasa_asmbl_53115.p1, internal, 510819, 510957 -recovered pasa_asmbl_53115.p1, internal, 511197, 511407 Valid prediction for snap_scaffold_8-snap.2088-T1 Valid prediction for Augustus_model.g14002.t1 Valid prediction for GeneMark_model.35719_t Valid prediction for GeneMark_model.35709_t Valid prediction for snap_scaffold_8-snap.2102-T1 Valid prediction for HiQ_model.g13992.t1 Valid prediction for snap_scaffold_8-snap.2109-T1 Valid prediction for snap_scaffold_8-snap.2097-T1 Valid prediction for Augustus_model.g14003.t1 Valid prediction for GlimmerHMM_glimmerT_20903-T1 Valid prediction for CodingQuarry_transcript_59656-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -) -building DP trellis -building trellis in range 1 - 553847 -exon list size: 657 building trellis 0.2 0.3 0.5 0.6 0.8 0.9 1.1 1.2 1.4 1.5 1.7 1.8 2.0 2.1 2.3 2.4 2.6 2.7 2.9 3.0 3.2 3.3 3.5 3.6 3.8 3.9 4.1 4.2 4.4 4.6 4.7 4.9 5.0 5.2 5.3 5.5 5.6 5.8 5.9 6.1 6.2 6.4 6.5 6.7 6.8 7.0 7.1 7.3 7.4 7.6 7.7 7.9 8.0 8.2 8.3 8.5 8.6 8.8 9.0 9.1 9.3 9.4 9.6 9.7 9.9 10.0 10.2 10.3 10.5 10.6 10.8 10.9 11.1 11.2 11.4 11.5 11.7 11.8 12.0 12.1 12.3 12.4 12.6 12.7 12.9 13.1 13.2 13.4 13.5 13.7 13.8 14.0 14.1 14.3 14.4 14.6 14.7 14.9 15.0 15.2 15.3 15.5 15.6 15.8 15.9 16.1 16.2 16.4 16.5 16.7 16.8 17.0 17.1 17.3 17.5 17.6 17.8 17.9 18.1 18.2 18.4 18.5 18.7 18.8 19.0 19.1 19.3 19.4 19.6 19.7 19.9 20.0 20.2 20.3 20.5 20.6 20.8 20.9 21.1 21.2 21.4 21.5 21.7 21.9 22.0 22.2 22.3 22.5 22.6 22.8 22.9 23.1 23.2 23.4 23.5 23.7 23.8 24.0 24.1 24.3 24.4 24.6 24.7 24.9 25.0 25.2 25.3 25.5 25.6 25.8 25.9 26.1 26.3 26.4 26.6 26.7 26.9 27.0 27.2 27.3 27.5 27.6 27.8 27.9 28.1 28.2 28.4 28.5 28.7 28.8 29.0 29.1 29.3 29.4 29.6 29.7 29.9 30.0 30.2 30.3 30.5 30.7 30.8 31.0 31.1 31.3 31.4 31.6 31.7 31.9 32.0 32.2 32.3 32.5 32.6 32.8 32.9 33.1 33.2 33.4 33.5 33.7 33.8 34.0 34.1 34.3 34.4 34.6 34.7 34.9 35.1 35.2 35.4 35.5 35.7 35.8 36.0 36.1 36.3 36.4 36.6 36.7 36.9 37.0 37.2 37.3 37.5 37.6 37.8 37.9 38.1 38.2 38.4 38.5 38.7 38.8 39.0 39.2 39.3 39.5 39.6 39.8 39.9 40.1 40.2 40.4 40.5 40.7 40.8 41.0 41.1 41.3 41.4 41.6 41.7 41.9 42.0 42.2 42.3 42.5 42.6 42.8 42.9 43.1 43.2 43.4 43.6 43.7 43.9 44.0 44.2 44.3 44.5 44.6 44.8 44.9 45.1 45.2 45.4 45.5 45.7 45.8 46.0 46.1 46.3 46.4 46.6 46.7 46.9 47.0 47.2 47.3 47.5 47.6 47.8 48.0 48.1 48.3 48.4 48.6 48.7 48.9 49.0 49.2 49.3 49.5 49.6 49.8 49.9 50.1 50.2 50.4 50.5 50.7 50.8 51.0 51.1 51.3 51.4 51.6 51.7 51.9 52.0 52.2 52.4 52.5 52.7 52.8 53.0 53.1 53.3 53.4 53.6 53.7 53.9 54.0 54.2 54.3 54.5 54.6 54.8 54.9 55.1 55.2 55.4 55.5 55.7 55.8 56.0 56.1 56.3 56.4 56.6 56.8 56.9 57.1 57.2 57.4 57.5 57.7 57.8 58.0 58.1 58.3 58.4 58.6 58.7 58.9 59.0 59.2 59.3 59.5 59.6 59.8 59.9 60.1 60.2 60.4 60.5 60.7 60.8 61.0 61.2 61.3 61.5 61.6 61.8 61.9 62.1 62.2 62.4 62.5 62.7 62.8 63.0 63.1 63.3 63.4 63.6 63.7 63.9 64.0 64.2 64.3 64.5 64.6 64.8 64.9 65.1 65.3 65.4 65.6 65.7 65.9 66.0 66.2 66.3 66.5 66.6 66.8 66.9 67.1 67.2 67.4 67.5 67.7 67.8 68.0 68.1 68.3 68.4 68.6 68.7 68.9 69.0 69.2 69.3 69.5 69.7 69.8 70.0 70.1 70.3 70.4 70.6 70.7 70.9 71.0 71.2 71.3 71.5 71.6 71.8 71.9 72.1 72.2 72.4 72.5 72.7 72.8 73.0 73.1 73.3 73.4 73.6 73.7 73.9 74.1 74.2 74.4 74.5 74.7 74.8 75.0 75.1 75.3 75.4 75.6 75.7 75.9 76.0 76.2 76.3 76.5 76.6 76.8 76.9 77.1 77.2 77.4 77.5 77.7 77.8 78.0 78.1 78.3 78.5 78.6 78.8 78.9 79.1 79.2 79.4 79.5 79.7 79.8 80.0 80.1 80.3 80.4 80.6 80.7 80.9 81.0 81.2 81.3 81.5 81.6 81.8 81.9 82.1 82.2 82.4 82.5 82.7 82.9 83.0 83.2 83.3 83.5 83.6 83.8 83.9 84.1 84.2 84.4 84.5 84.7 84.8 85.0 85.1 85.3 85.4 85.6 85.7 85.9 86.0 86.2 86.3 86.5 86.6 86.8 86.9 87.1 87.3 87.4 87.6 87.7 87.9 88.0 88.2 88.3 88.5 88.6 88.8 88.9 89.1 89.2 89.4 89.5 89.7 89.8 90.0 90.1 90.3 90.4 90.6 90.7 90.9 91.0 91.2 91.4 91.5 91.7 91.8 92.0 92.1 92.3 92.4 92.6 92.7 92.9 93.0 93.2 93.3 93.5 93.6 93.8 93.9 94.1 94.2 94.4 94.5 94.7 94.8 95.0 95.1 95.3 95.4 95.6 95.8 95.9 96.1 96.2 96.4 96.5 96.7 96.8 97.0 97.1 97.3 97.4 97.6 97.7 97.9 98.0 98.2 98.3 98.5 98.6 98.8 98.9 99.1 99.2 99.4 99.5 99.7 99.8 -found 36 predictions from path traversal -reporting highest scoring path thru the trellis. -found 33 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 42052 -exon list size: 14 building trellis 6.2 12.5 18.8 25.0 31.2 37.5 43.8 50.0 56.2 62.5 68.8 75.0 81.2 87.5 93.8 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support -building DP trellis -building trellis in range 2573 - 42052 -exon list size: 13 building trellis 6.7 13.3 20.0 26.7 33.3 40.0 46.7 53.3 60.0 66.7 73.3 80.0 86.7 93.3 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support -building DP trellis -building trellis in range 2573 - 40508 -exon list size: 11 building trellis 7.7 15.4 23.1 30.8 38.5 46.2 53.8 61.5 69.2 76.9 84.6 92.3 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 3302 - 40508 -exon list size: 10 building trellis 8.3 16.7 25.0 33.3 41.7 50.0 58.3 66.7 75.0 83.3 91.7 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 6441 - 40508 -exon list size: 6 building trellis 12.5 25.0 37.5 50.0 62.5 75.0 87.5 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 6441 - 39942 -exon list size: 5 building trellis 14.3 28.6 42.9 57.1 71.4 85.7 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 7184 - 39942 -exon list size: 4 building trellis 16.7 33.3 50.0 66.7 83.3 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 7184 - 38235 -exon list size: 3 building trellis 20.0 40.0 60.0 80.0 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 7184 - 22384 -exon list size: 1 building trellis 33.3 66.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 22478 - 38235 -exon list size: 1 building trellis 33.3 66.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support