-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_8/scaffold_8_10197215-10446451

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g13964.t1
Valid prediction for snap_scaffold_8-snap.2021-T1
Valid prediction for GlimmerHMM_glimmerT_20860-T1
Valid prediction for pasa_asmbl_52158.p1
Valid prediction for HiQ_model.g13962.t1
Valid prediction for GeneMark_model.35628_t
Valid prediction for GeneMark_model.35621_t
Valid prediction for pasa_asmbl_52154.p1
Valid prediction for snap_scaffold_8-snap.2005-T1
Valid prediction for GlimmerHMM_glimmerT_20855-T1
Valid prediction for snap_scaffold_8-snap.2004-T1
Valid prediction for snap_scaffold_8-snap.2008-T1
Valid prediction for GeneMark_model.35637_t
Couldn't classify 15336, 15425
Sorry, prediction pasa_asmbl_52143.p1 fails validation.
(ATG)	 GA	12836-12875	GT	AGG
(GTG)	 AG	13523-13569	GT	AGG
(TGT)	 AG	13685-13752	GT	AAG
(CTG)	 AG	13966-14052	GT	CAG
(AAA)	 AG	14185-14223	GT	AAG
(GGA)	 AG	14538-14618	GT	CTG
(GAA)	 AG	14702-14727	GT	GAG
(CAC)	 AG	14857-14945	GT	GTG
(GAG)	 AG	15059-15160	GT	AGG
(CTC)	 AG	15336-15425	TA	AGT
-recovered pasa_asmbl_52143.p1, initial, 12836, 12875
-recovered pasa_asmbl_52143.p1, internal, 13523, 13569
-recovered pasa_asmbl_52143.p1, internal, 13685, 13752
-recovered pasa_asmbl_52143.p1, internal, 13966, 14052
-recovered pasa_asmbl_52143.p1, internal, 14185, 14223
-recovered pasa_asmbl_52143.p1, internal, 14538, 14618
-recovered pasa_asmbl_52143.p1, internal, 14702, 14727
-recovered pasa_asmbl_52143.p1, internal, 14857, 14945
-recovered pasa_asmbl_52143.p1, internal, 15059, 15160
Valid prediction for Augustus_model.g13967.t1
Valid prediction for GeneMark_model.35633_t
Valid prediction for snap_scaffold_8-snap.2009-T1
Valid prediction for snap_scaffold_8-snap.2015-T1
Valid prediction for GlimmerHMM_glimmerT_20862-T1
Valid prediction for GlimmerHMM_glimmerT_20847-T1
Valid prediction for CodingQuarry_transcript_59644-T1
Valid prediction for GlimmerHMM_glimmerT_20848-T1
Valid prediction for GeneMark_model.35617_t
Valid prediction for GeneMark_model.35634_t
Valid prediction for Augustus_model.g13966.t1
Valid prediction for CodingQuarry_transcript_59645-T1
Valid prediction for CodingQuarry_transcript_59646-T1
Valid prediction for snap_scaffold_8-snap.2019-T1
Valid prediction for HiQ_model.g13960.t1
Valid prediction for GlimmerHMM_glimmerT_20852-T1
Valid prediction for GlimmerHMM_glimmerT_20865-T1
Valid prediction for GlimmerHMM_glimmerT_20857-T1
Valid prediction for GeneMark_model.35642_t
Valid prediction for GeneMark_model.35630_t
Valid prediction for GeneMark_model.35644_t
Valid prediction for GeneMark_model.35640_t
Valid prediction for snap_scaffold_8-snap.2006-T1
Valid prediction for snap_scaffold_8-snap.2017-T1
Valid prediction for GeneMark_model.35609_t
Valid prediction for GeneMark_model.35632_t
Valid prediction for GeneMark_model.35626_t
Valid prediction for GeneMark_model.35641_t
Valid prediction for GlimmerHMM_glimmerT_20856-T1
Valid prediction for GeneMark_model.35612_t
Valid prediction for snap_scaffold_8-snap.2010-T1
Valid prediction for GeneMark_model.35615_t
Valid prediction for GeneMark_model.35616_t
Valid prediction for GeneMark_model.35636_t
Valid prediction for GlimmerHMM_glimmerT_20854-T1
Valid prediction for GlimmerHMM_glimmerT_20863-T1
Valid prediction for GeneMark_model.35625_t
Valid prediction for GeneMark_model.35623_t
Valid prediction for GeneMark_model.35619_t
Valid prediction for GeneMark_model.35622_t
Valid prediction for snap_scaffold_8-snap.2012-T1
Valid prediction for GlimmerHMM_glimmerT_20858-T1
Valid prediction for GeneMark_model.35618_t
Valid prediction for GeneMark_model.35614_t
Valid prediction for HiQ_model.g13961.t1
Valid prediction for GeneMark_model.35611_t
Valid prediction for GlimmerHMM_glimmerT_20849-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.2016-T1
Valid prediction for Augustus_model.g13963.t1
Valid prediction for GeneMark_model.35610_t
Valid prediction for snap_scaffold_8-snap.2022-T1
Valid prediction for snap_scaffold_8-snap.2018-T1
Valid prediction for GeneMark_model.35629_t
Valid prediction for GeneMark_model.35643_t
Valid prediction for GlimmerHMM_glimmerT_20846-T1
Valid prediction for snap_scaffold_8-snap.2014-T1
Valid prediction for snap_scaffold_8-snap.2025-T1
Valid prediction for GeneMark_model.35624_t
Valid prediction for snap_scaffold_8-snap.2013-T1
Valid prediction for GeneMark_model.35639_t
Valid prediction for GlimmerHMM_glimmerT_20850-T1
Valid prediction for snap_scaffold_8-snap.2023-T1
Valid prediction for snap_scaffold_8-snap.2024-T1
Valid prediction for GeneMark_model.35613_t
Valid prediction for GeneMark_model.35627_t
Valid prediction for GeneMark_model.35635_t
Valid prediction for Augustus_model.g13968.t1
Valid prediction for GeneMark_model.35620_t
Valid prediction for snap_scaffold_8-snap.2027-T1
Valid prediction for Augustus_model.g13969.t1
Valid prediction for GlimmerHMM_glimmerT_20851-T1
Valid prediction for GlimmerHMM_glimmerT_20859-T1
Valid prediction for snap_scaffold_8-snap.2028-T1
Valid prediction for Augustus_model.g13965.t1
Valid prediction for snap_scaffold_8-snap.2011-T1
Valid prediction for GlimmerHMM_glimmerT_20864-T1
Valid prediction for GlimmerHMM_glimmerT_20861-T1
Valid prediction for snap_scaffold_8-snap.2026-T1
Valid prediction for GeneMark_model.35638_t
Valid prediction for snap_scaffold_8-snap.2007-T1
Valid prediction for snap_scaffold_8-snap.2020-T1
Valid prediction for Augustus_model.g13970.t1
Valid prediction for GlimmerHMM_glimmerT_20853-T1
Valid prediction for snap_scaffold_8-snap.2029-T1
Valid prediction for GeneMark_model.35631_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 119154, rend_intergenic: 109606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169226, rend_intergenic: 163451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 249237
-exon list size: 413


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.4    
1.7    
1.9    
2.2    
2.4    
2.7    
2.9    
3.1    
3.4    
3.6    
3.9    
4.1    
4.3    
4.6    
4.8    
5.1    
5.3    
5.5    
5.8    
6.0    
6.3    
6.5    
6.7    
7.0    
7.2    
7.5    
7.7    
8.0    
8.2    
8.4    
8.7    
8.9    
9.2    
9.4    
9.6    
9.9    
10.1    
10.4    
10.6    
10.8    
11.1    
11.3    
11.6    
11.8    
12.0    
12.3    
12.5    
12.8    
13.0    
13.3    
13.5    
13.7    
14.0    
14.2    
14.5    
14.7    
14.9    
15.2    
15.4    
15.7    
15.9    
16.1    
16.4    
16.6    
16.9    
17.1    
17.3    
17.6    
17.8    
18.1    
18.3    
18.6    
18.8    
19.0    
19.3    
19.5    
19.8    
20.0    
20.2    
20.5    
20.7    
21.0    
21.2    
21.4    
21.7    
21.9    
22.2    
22.4    
22.7    
22.9    
23.1    
23.4    
23.6    
23.9    
24.1    
24.3    
24.6    
24.8    
25.1    
25.3    
25.5    
25.8    
26.0    
26.3    
26.5    
26.7    
27.0    
27.2    
27.5    
27.7    
28.0    
28.2    
28.4    
28.7    
28.9    
29.2    
29.4    
29.6    
29.9    
30.1    
30.4    
30.6    
30.8    
31.1    
31.3    
31.6    
31.8    
32.0    
32.3    
32.5    
32.8    
33.0    
33.3    
33.5    
33.7    
34.0    
34.2    
34.5    
34.7    
34.9    
35.2    
35.4    
35.7    
35.9    
36.1    
36.4    
36.6    
36.9    
37.1    
37.3    
37.6    
37.8    
38.1    
38.3    
38.6    
38.8    
39.0    
39.3    
39.5    
39.8    
40.0    
40.2    
40.5    
40.7    
41.0    
41.2    
41.4    
41.7    
41.9    
42.2    
42.4    
42.7    
42.9    
43.1    
43.4    
43.6    
43.9    
44.1    
44.3    
44.6    
44.8    
45.1    
45.3    
45.5    
45.8    
46.0    
46.3    
46.5    
46.7    
47.0    
47.2    
47.5    
47.7    
48.0    
48.2    
48.4    
48.7    
48.9    
49.2    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.8    
51.1    
51.3    
51.6    
51.8    
52.0    
52.3    
52.5    
52.8    
53.0    
53.3    
53.5    
53.7    
54.0    
54.2    
54.5    
54.7    
54.9    
55.2    
55.4    
55.7    
55.9    
56.1    
56.4    
56.6    
56.9    
57.1    
57.3    
57.6    
57.8    
58.1    
58.3    
58.6    
58.8    
59.0    
59.3    
59.5    
59.8    
60.0    
60.2    
60.5    
60.7    
61.0    
61.2    
61.4    
61.7    
61.9    
62.2    
62.4    
62.7    
62.9    
63.1    
63.4    
63.6    
63.9    
64.1    
64.3    
64.6    
64.8    
65.1    
65.3    
65.5    
65.8    
66.0    
66.3    
66.5    
66.7    
67.0    
67.2    
67.5    
67.7    
68.0    
68.2    
68.4    
68.7    
68.9    
69.2    
69.4    
69.6    
69.9    
70.1    
70.4    
70.6    
70.8    
71.1    
71.3    
71.6    
71.8    
72.0    
72.3    
72.5    
72.8    
73.0    
73.3    
73.5    
73.7    
74.0    
74.2    
74.5    
74.7    
74.9    
75.2    
75.4    
75.7    
75.9    
76.1    
76.4    
76.6    
76.9    
77.1    
77.3    
77.6    
77.8    
78.1    
78.3    
78.6    
78.8    
79.0    
79.3    
79.5    
79.8    
80.0    
80.2    
80.5    
80.7    
81.0    
81.2    
81.4    
81.7    
81.9    
82.2    
82.4    
82.7    
82.9    
83.1    
83.4    
83.6    
83.9    
84.1    
84.3    
84.6    
84.8    
85.1    
85.3    
85.5    
85.8    
86.0    
86.3    
86.5    
86.7    
87.0    
87.2    
87.5    
87.7    
88.0    
88.2    
88.4    
88.7    
88.9    
89.2    
89.4    
89.6    
89.9    
90.1    
90.4    
90.6    
90.8    
91.1    
91.3    
91.6    
91.8    
92.0    
92.3    
92.5    
92.8    
93.0    
93.3    
93.5    
93.7    
94.0    
94.2    
94.5    
94.7    
94.9    
95.2    
95.4    
95.7    
95.9    
96.1    
96.4    
96.6    
96.9    
97.1    
97.3    
97.6    
97.8    
98.1    
98.3    
98.6    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 119154, rend_intergenic: 109606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169226, rend_intergenic: 163451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support