-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_798

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 806, 847
Sorry, prediction GeneMark_model.108403_t fails validation.
(GGG)	 AG	806-847	GT	AGG
(AGA)	 AG	899-928	GT	TTG
(CAT)	 AG	1135-1140	GT	AGG
(GAG)	 AG	1208-1276	GT	GGG
(GAA)	 AG	1396-1434	GT	GGG
(GAA)	 AG	1595-1627	GT	GGG
(GTG)	 AG	1671-1715	GT	CGG
(AGC)	 AG	1834-1881	GT	TGG
(GGG)	 AG	1905-1982	GT	GAG
(GGA)	 AG	2770-2802	GT	GGG
(TGG)	 AG	2964-2981	GT	GAG
(GGG)	 AG	3008-3019	GT	AGG
(AAT)	 AG	3042-3057	GG	AAG
-recovered GeneMark_model.108403_t, terminal, 806, 847
-recovered GeneMark_model.108403_t, terminal, 3042, 3057
-recovered GeneMark_model.108403_t, internal, 806, 847
-recovered GeneMark_model.108403_t, internal, 899, 928
-recovered GeneMark_model.108403_t, internal, 1135, 1140
-recovered GeneMark_model.108403_t, internal, 1208, 1276
-recovered GeneMark_model.108403_t, internal, 1396, 1434
-recovered GeneMark_model.108403_t, internal, 1595, 1627
-recovered GeneMark_model.108403_t, internal, 1671, 1715
-recovered GeneMark_model.108403_t, internal, 1834, 1881
-recovered GeneMark_model.108403_t, internal, 1905, 1982
-recovered GeneMark_model.108403_t, internal, 2770, 2802
-recovered GeneMark_model.108403_t, internal, 2964, 2981
-recovered GeneMark_model.108403_t, internal, 3008, 3019

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 293, 304
Sorry, prediction GeneMark_model.108404_t fails validation.
(GAA)	 AG	293-304	GT	GGG
(GAG)	 AG	327-353	GT	GAG
(AAA)	 AG	380-418	GT	GAG
(GAG)	 AG	480-485	GT	GAG
(AGA)	 AG	537-644	GT	CCG
(AGT)	 AG	782-846	GT	GCG
(CCA)	 AG	1276-1295	AC	AAA
-recovered GeneMark_model.108404_t, terminal, 1276, 1295
-recovered GeneMark_model.108404_t, internal, 293, 304
-recovered GeneMark_model.108404_t, internal, 327, 353
-recovered GeneMark_model.108404_t, internal, 380, 418
-recovered GeneMark_model.108404_t, internal, 480, 485
-recovered GeneMark_model.108404_t, internal, 537, 644
-recovered GeneMark_model.108404_t, internal, 782, 846

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4414
-exon list size: 39


building trellis

2.4    
4.9    
7.3    
9.8    
12.2    
14.6    
17.1    
19.5    
22.0    
24.4    
26.8    
29.3    
31.7    
34.1    
36.6    
39.0    
41.5    
43.9    
46.3    
48.8    
51.2    
53.7    
56.1    
58.5    
61.0    
63.4    
65.9    
68.3    
70.7    
73.2    
75.6    
78.0    
80.5    
82.9    
85.4    
87.8    
90.2    
92.7    
95.1    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support