-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_796

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4369, 4392
Sorry, prediction GeneMark_model.108400_t fails validation.
(ATG)	 AG	1923-1957	GT	AAG
(GAG)	 AG	3801-3821	GT	GAG
(GGG)	 AG	3848-3862	GT	GAG
(GGA)	 AG	3892-3969	GT	CAG
(AGG)	 AG	4169-4183	GT	GAG
(GAG)	 AG	4207-4248	GT	GAG
(AGG)	 AG	4272-4346	GT	GGG
(GAA)	 AG	4369-4392	GT	GGG
-recovered GeneMark_model.108400_t, initial, 1923, 1957
-recovered GeneMark_model.108400_t, internal, 1923, 1957
-recovered GeneMark_model.108400_t, internal, 3801, 3821
-recovered GeneMark_model.108400_t, internal, 3848, 3862
-recovered GeneMark_model.108400_t, internal, 3892, 3969
-recovered GeneMark_model.108400_t, internal, 4169, 4183
-recovered GeneMark_model.108400_t, internal, 4207, 4248
-recovered GeneMark_model.108400_t, internal, 4272, 4346
-recovered GeneMark_model.108400_t, internal, 4369, 4392
Couldn't classify 287, 381
Sorry, prediction snap_scaffold_796-snap.2-T1 fails validation.
(TCG)	 AG	287-381	GT	AGG
(GAA)	 AG	1145-1225	GT	AAG
(GAG)	 AG	4151-4345	GG	AGG
-recovered snap_scaffold_796-snap.2-T1, terminal, 4151, 4345
-recovered snap_scaffold_796-snap.2-T1, internal, 287, 381
-recovered snap_scaffold_796-snap.2-T1, internal, 1145, 1225

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4329, 4355
Sorry, prediction GeneMark_model.108399_t fails validation.
(ATG)	 AG	2784-2840	GT	CTG
(GTC)	 AG	3057-3112	GT	CAG
(GAT)	 AG	3135-3288	GT	ATG
(GAA)	 AG	4091-4230	GT	GAG
(TGT)	 AG	4257-4304	GT	GAG
(AGA)	 AG	4329-4355	GC	GGG
-recovered GeneMark_model.108399_t, initial, 2784, 2840
-recovered GeneMark_model.108399_t, internal, 2784, 2840
-recovered GeneMark_model.108399_t, internal, 3057, 3112
-recovered GeneMark_model.108399_t, internal, 3135, 3288
-recovered GeneMark_model.108399_t, internal, 4091, 4230
-recovered GeneMark_model.108399_t, internal, 4257, 4304
-recovered GeneMark_model.108399_t, internal, 4329, 4355
Valid prediction for pasa_asmbl_51633.p1
Couldn't classify 2461, 2589
Sorry, prediction GlimmerHMM_glimmerT_62245-T1 fails validation.
(GAC)	 AG	2461-2589	GT	AGG
(ATG)	 AG	3103-3288	GT	ATG
(GAA)	 AG	4091-4234	CT	GAC
-recovered GlimmerHMM_glimmerT_62245-T1, initial, 3103, 3288
-recovered GlimmerHMM_glimmerT_62245-T1, terminal, 4091, 4234
-recovered GlimmerHMM_glimmerT_62245-T1, internal, 2461, 2589
-recovered GlimmerHMM_glimmerT_62245-T1, internal, 3103, 3288
Couldn't classify 2461, 2589
Sorry, prediction snap_scaffold_796-snap.1-T1 fails validation.
(GAC)	 AG	2461-2589	GT	AGG
(TCT)	 AG	2775-2864	GT	TGG
(ATG)	 AG	3103-3288	GT	ATG
(GAA)	 AG	4091-4234	CT	GAC
-recovered snap_scaffold_796-snap.1-T1, initial, 3103, 3288
-recovered snap_scaffold_796-snap.1-T1, terminal, 4091, 4234
-recovered snap_scaffold_796-snap.1-T1, internal, 2461, 2589
-recovered snap_scaffold_796-snap.1-T1, internal, 2775, 2864
-recovered snap_scaffold_796-snap.1-T1, internal, 3103, 3288
Valid prediction for Augustus_model.g41379.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1960, rend_intergenic: 287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4420
-exon list size: 52


building trellis

1.9    
3.7    
5.6    
7.4    
9.3    
11.1    
13.0    
14.8    
16.7    
18.5    
20.4    
22.2    
24.1    
25.9    
27.8    
29.6    
31.5    
33.3    
35.2    
37.0    
38.9    
40.7    
42.6    
44.4    
46.3    
48.1    
50.0    
51.9    
53.7    
55.6    
57.4    
59.3    
61.1    
63.0    
64.8    
66.7    
68.5    
70.4    
72.2    
74.1    
75.9    
77.8    
79.6    
81.5    
83.3    
85.2    
87.0    
88.9    
90.7    
92.6    
94.4    
96.3    
98.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 1960, rend_intergenic: 287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support