-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_795

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4236, 4397
Sorry, prediction snap_scaffold_795-snap.2-T1 fails validation.
(ATG)	 GG	1205-1425	GT	AGG
(GCT)	 AG	1976-2254	GT	AGG
(GTC)	 AG	2355-2580	GT	ATG
(TTG)	 AG	4236-4397	GT	GGG
-recovered snap_scaffold_795-snap.2-T1, initial, 1205, 1425
-recovered snap_scaffold_795-snap.2-T1, internal, 1976, 2254
-recovered snap_scaffold_795-snap.2-T1, internal, 2355, 2580
-recovered snap_scaffold_795-snap.2-T1, internal, 4236, 4397
Couldn't classify 685, 812
Sorry, prediction GeneMark_model.108397_t fails validation.
(GAG)	 AG	685-812	GT	GAG
(AGG)	 AG	853-864	GT	GGG
(GAG)	 AG	886-897	GT	GGG
(CTT)	 AG	920-955	GT	GAG
(GAA)	 AG	974-985	GT	GGG
(GAG)	 AG	1007-1075	GT	GGG
(GGA)	 AG	1100-1156	GT	GGG
(AGA)	 AG	1191-1211	GT	GGG
(AGC)	 AG	1250-1255	GT	GAG
(AGA)	 AG	1277-1306	GT	GGG
(GAG)	 AG	1329-1425	GT	AGG
(ACC)	 AG	1688-1707	GT	AAG
(GGT)	 AG	1748-1759	GT	AGG
(GAG)	 AG	1780-1818	GT	AGG
(TGT)	 AG	1859-1918	GT	GGG
(TAG)	 AG	1961-2254	GT	AGG
(GAG)	 AG	2389-2530	AA	GAA
-recovered GeneMark_model.108397_t, terminal, 1780, 1818
-recovered GeneMark_model.108397_t, terminal, 2389, 2530
-recovered GeneMark_model.108397_t, internal, 685, 812
-recovered GeneMark_model.108397_t, internal, 853, 864
-recovered GeneMark_model.108397_t, internal, 886, 897
-recovered GeneMark_model.108397_t, internal, 920, 955
-recovered GeneMark_model.108397_t, internal, 974, 985
-recovered GeneMark_model.108397_t, internal, 1007, 1075
-recovered GeneMark_model.108397_t, internal, 1100, 1156
-recovered GeneMark_model.108397_t, internal, 1191, 1211
-recovered GeneMark_model.108397_t, internal, 1250, 1255
-recovered GeneMark_model.108397_t, internal, 1277, 1306
-recovered GeneMark_model.108397_t, internal, 1329, 1425
-recovered GeneMark_model.108397_t, internal, 1688, 1707
-recovered GeneMark_model.108397_t, internal, 1748, 1759
-recovered GeneMark_model.108397_t, internal, 1780, 1818
-recovered GeneMark_model.108397_t, internal, 1859, 1918
-recovered GeneMark_model.108397_t, internal, 1961, 2254

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41378.t1
Couldn't classify 53, 280
Couldn't classify 3666, 3755
Sorry, prediction snap_scaffold_795-snap.1-T1 fails validation.
(TAT)	 AG	53-280	GT	GGG
(GAC)	 AG	2341-2448	GT	CTG
(GGC)	 AG	3666-3755	GT	TGG
-recovered snap_scaffold_795-snap.1-T1, internal, 53, 280
-recovered snap_scaffold_795-snap.1-T1, internal, 2341, 2448
-recovered snap_scaffold_795-snap.1-T1, internal, 3666, 3755
Couldn't classify 53, 303
Sorry, prediction GeneMark_model.108398_t fails validation.
(TAT)	 AG	53-303	GT	AGG
(AGA)	 AG	324-357	AC	AAA
-recovered GeneMark_model.108398_t, terminal, 324, 357
-recovered GeneMark_model.108398_t, internal, 53, 303
Valid prediction for GlimmerHMM_glimmerT_62244-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4369, rend_intergenic: 1205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4421
-exon list size: 59


building trellis

1.6    
3.3    
4.9    
6.6    
8.2    
9.8    
11.5    
13.1    
14.8    
16.4    
18.0    
19.7    
21.3    
23.0    
24.6    
26.2    
27.9    
29.5    
31.1    
32.8    
34.4    
36.1    
37.7    
39.3    
41.0    
42.6    
44.3    
45.9    
47.5    
49.2    
50.8    
52.5    
54.1    
55.7    
57.4    
59.0    
60.7    
62.3    
63.9    
65.6    
67.2    
68.9    
70.5    
72.1    
73.8    
75.4    
77.0    
78.7    
80.3    
82.0    
83.6    
85.2    
86.9    
88.5    
90.2    
91.8    
93.4    
95.1    
96.7    
98.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4369, rend_intergenic: 1205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support