-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_793

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4382, 4424
Sorry, prediction GeneMark_model.108393_t fails validation.
(ATG)	 AG	4129-4232	GT	TCG
(AGG)	 AG	4341-4355	GT	AGG
(AGA)	 AG	4382-4424	GT	AGG
-recovered GeneMark_model.108393_t, initial, 4129, 4232
-recovered GeneMark_model.108393_t, internal, 4129, 4232
-recovered GeneMark_model.108393_t, internal, 4341, 4355
-recovered GeneMark_model.108393_t, internal, 4382, 4424
Couldn't classify 356, 445
Sorry, prediction GeneMark_model.108389_t fails validation.
(TGT)	 AG	356-445	GT	ATG
(AGA)	 AG	475-498	GT	AGG
(GAG)	 AG	613-688	GA	GAG
-recovered GeneMark_model.108389_t, terminal, 613, 688
-recovered GeneMark_model.108389_t, internal, 356, 445
-recovered GeneMark_model.108389_t, internal, 475, 498
Couldn't classify 4106, 4232
Sorry, prediction snap_scaffold_793-snap.2-T1 fails validation.
(ATG)	 AG	3487-3568	GT	GGG
(TGT)	 AG	4106-4232	GT	TCG
-recovered snap_scaffold_793-snap.2-T1, initial, 3487, 3568
-recovered snap_scaffold_793-snap.2-T1, internal, 3487, 3568
-recovered snap_scaffold_793-snap.2-T1, internal, 4106, 4232

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108391_t
Valid prediction for snap_scaffold_793-snap.3-T1
Valid prediction for GeneMark_model.108392_t
Valid prediction for snap_scaffold_793-snap.1-T1
Valid prediction for GeneMark_model.108390_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4232, rend_intergenic: 3739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4434
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4232, rend_intergenic: 3739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support