-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_790

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2272, 2388
Sorry, prediction snap_scaffold_790-snap.2-T1 fails validation.
(ATG)	 AG	1014-1122	GT	AGG
(GAT)	 AG	1760-1848	GT	AGG
(AAA)	 AG	2272-2388	GT	TCG
-recovered snap_scaffold_790-snap.2-T1, initial, 1014, 1122
-recovered snap_scaffold_790-snap.2-T1, internal, 1014, 1122
-recovered snap_scaffold_790-snap.2-T1, internal, 1760, 1848
-recovered snap_scaffold_790-snap.2-T1, internal, 2272, 2388
Couldn't classify 318, 344
Sorry, prediction GeneMark_model.108382_t fails validation.
(GGA)	 AG	318-344	GT	GGG
(GGG)	 AG	758-874	GT	GGG
(AGG)	 AG	1099-1122	GT	AGG
(AGG)	 AG	1382-1486	GT	AGG
(GCA)	 AG	1549-1605	GT	GGG
(CGA)	 AG	1711-1848	GT	AGG
(AGA)	 AG	2827-2893	TG	GAT
-recovered GeneMark_model.108382_t, terminal, 2827, 2893
-recovered GeneMark_model.108382_t, internal, 318, 344
-recovered GeneMark_model.108382_t, internal, 758, 874
-recovered GeneMark_model.108382_t, internal, 1099, 1122
-recovered GeneMark_model.108382_t, internal, 1382, 1486
-recovered GeneMark_model.108382_t, internal, 1549, 1605
-recovered GeneMark_model.108382_t, internal, 1711, 1848

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 22, 36
Sorry, prediction GeneMark_model.108384_t fails validation.
(AGA)	 AG	22-36	GT	GCG
(AGA)	 AG	67-81	GT	GCG
(AGA)	 AG	112-126	GT	GCG
(AGA)	 AG	157-171	GT	GCG
(AGA)	 AG	202-216	GT	GCG
(AGA)	 AG	247-261	GT	GCG
(AGG)	 AG	294-327	CT	GAC
-recovered GeneMark_model.108384_t, terminal, 294, 327
-recovered GeneMark_model.108384_t, internal, 22, 36
-recovered GeneMark_model.108384_t, internal, 67, 81
-recovered GeneMark_model.108384_t, internal, 112, 126
-recovered GeneMark_model.108384_t, internal, 157, 171
-recovered GeneMark_model.108384_t, internal, 202, 216
-recovered GeneMark_model.108384_t, internal, 247, 261
Valid prediction for snap_scaffold_790-snap.1-T1
Valid prediction for GeneMark_model.108383_t
Valid prediction for Augustus_model.g41376.t1
Couldn't classify 2582, 2689
Sorry, prediction GlimmerHMM_glimmerT_62240-T1 fails validation.
(AGT)	 AG	2582-2689	GT	ACG
(AGG)	 AG	3276-3357	GT	AGG
(GTG)	 AG	3625-3767	AT	AAA
-recovered GlimmerHMM_glimmerT_62240-T1, terminal, 3625, 3767
-recovered GlimmerHMM_glimmerT_62240-T1, internal, 2582, 2689
-recovered GlimmerHMM_glimmerT_62240-T1, internal, 3276, 3357

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3915, rend_intergenic: 1014  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4441
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3915, rend_intergenic: 1014  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support