-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_79

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106442_t
Couldn't classify 20071, 20166
Sorry, prediction snap_scaffold_79-snap.3-T1 fails validation.
(ATG)	 CT	8092-8245	GT	AAG
(GTG)	 AG	8445-8570	GT	AGG
(TAT)	 AG	11669-11791	GT	GCG
(AAG)	 AG	20071-20166	GT	AGG
-recovered snap_scaffold_79-snap.3-T1, initial, 8092, 8245
-recovered snap_scaffold_79-snap.3-T1, terminal, 8445, 8570
-recovered snap_scaffold_79-snap.3-T1, internal, 8445, 8570
-recovered snap_scaffold_79-snap.3-T1, internal, 11669, 11791
-recovered snap_scaffold_79-snap.3-T1, internal, 20071, 20166
Valid prediction for GeneMark_model.106440_t
Valid prediction for GlimmerHMM_glimmerT_61221-T1
Valid prediction for GlimmerHMM_glimmerT_61220-T1
Valid prediction for GeneMark_model.106441_t
Couldn't classify 19864, 19887
Sorry, prediction GeneMark_model.106444_t fails validation.
(CTA)	 AG	19864-19887	GT	GAG
(TCA)	 AG	20081-20180	GC	GAG
-recovered GeneMark_model.106444_t, terminal, 20081, 20180
-recovered GeneMark_model.106444_t, internal, 19864, 19887
-recovered GeneMark_model.106444_t, internal, 20081, 20180
Valid prediction for GlimmerHMM_glimmerT_61219-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61219-T1 907-1247-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_79-snap.2-T1
Couldn't classify 7459, 7593
Sorry, prediction GeneMark_model.106443_t fails validation.
(GGT)	 AG	7459-7593	GT	GTG
(GGT)	 AG	7615-7743	GT	GAG
(GGA)	 AG	8948-8968	GT	GAG
(AGA)	 AG	8992-9042	GT	GAG
(AAC)	 AG	11512-11578	AA	GAA
-recovered GeneMark_model.106443_t, terminal, 11512, 11578
-recovered GeneMark_model.106443_t, internal, 7459, 7593
-recovered GeneMark_model.106443_t, internal, 7615, 7743
-recovered GeneMark_model.106443_t, internal, 8948, 8968
-recovered GeneMark_model.106443_t, internal, 8992, 9042
Valid prediction for snap_scaffold_79-snap.1-T1
Valid prediction for snap_scaffold_79-snap.4-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12664, rend_intergenic: 8092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20166, rend_intergenic: 12714  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 20460
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 12664, rend_intergenic: 8092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20166, rend_intergenic: 12714  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support