-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_789

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4344, 4382
Sorry, prediction GeneMark_model.108381_t fails validation.
(ATG)	 AA	1482-1493	GT	CTG
(GAA)	 AG	1832-1902	GT	AAG
(GAG)	 AG	2170-2506	GT	GGG
(GTC)	 AG	2858-2901	GT	TTG
(ACG)	 AG	2926-2994	GT	GAG
(AGA)	 AG	3132-3161	GC	AGG
(GAA)	 AG	3185-3409	GC	GGG
(GGA)	 AG	3435-3572	GT	GGG
(GAA)	 AG	3595-3777	GT	AGG
(AGA)	 AG	4344-4382	GC	AGG
-recovered GeneMark_model.108381_t, initial, 1482, 1493
-recovered GeneMark_model.108381_t, internal, 1832, 1902
-recovered GeneMark_model.108381_t, internal, 2170, 2506
-recovered GeneMark_model.108381_t, internal, 2858, 2901
-recovered GeneMark_model.108381_t, internal, 2926, 2994
-recovered GeneMark_model.108381_t, internal, 3132, 3161
-recovered GeneMark_model.108381_t, internal, 3185, 3409
-recovered GeneMark_model.108381_t, internal, 3435, 3572
-recovered GeneMark_model.108381_t, internal, 3595, 3777
-recovered GeneMark_model.108381_t, internal, 4344, 4382
Couldn't classify 2155, 2506
Couldn't classify 3098, 3572
Sorry, prediction snap_scaffold_789-snap.2-T1 fails validation.
(GAG)	 AG	2155-2506	GT	GGG
(GTG)	 AG	3098-3572	GT	GGG
-recovered snap_scaffold_789-snap.2-T1, internal, 2155, 2506
-recovered snap_scaffold_789-snap.2-T1, internal, 3098, 3572

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3527, 3535
Sorry, prediction GeneMark_model.108380_t fails validation.
(ATG)	 GG	2995-3065	GT	ATG
(ATA)	 AG	3253-3270	GT	GTG
(GGG)	 AG	3297-3308	GT	GAG
(GGA)	 AG	3338-3367	GT	GAG
(AGA)	 AG	3405-3422	GT	AGG
(GGA)	 AG	3445-3501	GT	GAG
(AGC)	 AG	3527-3535	GT	GAG
-recovered GeneMark_model.108380_t, initial, 2995, 3065
-recovered GeneMark_model.108380_t, internal, 3253, 3270
-recovered GeneMark_model.108380_t, internal, 3297, 3308
-recovered GeneMark_model.108380_t, internal, 3338, 3367
-recovered GeneMark_model.108380_t, internal, 3405, 3422
-recovered GeneMark_model.108380_t, internal, 3445, 3501
-recovered GeneMark_model.108380_t, internal, 3527, 3535
Couldn't classify 1492, 1596
Couldn't classify 2534, 2635
Sorry, prediction snap_scaffold_789-snap.1-T1 fails validation.
(CTC)	 AG	1492-1596	GT	AGG
(GGT)	 AG	2534-2635	GT	TCG
-recovered snap_scaffold_789-snap.1-T1, internal, 1492, 1596
-recovered snap_scaffold_789-snap.1-T1, internal, 2534, 2635

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2956, rend_intergenic: 2155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4447
-exon list size: 47


building trellis

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18.4    
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28.6    
30.6    
32.7    
34.7    
36.7    
38.8    
40.8    
42.9    
44.9    
46.9    
49.0    
51.0    
53.1    
55.1    
57.1    
59.2    
61.2    
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87.8    
89.8    
91.8    
93.9    
95.9    
98.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2956, rend_intergenic: 2155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support