-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_787

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41373.t1
Valid prediction for GlimmerHMM_glimmerT_62237-T1
Valid prediction for GlimmerHMM_glimmerT_62236-T1
Couldn't classify 23, 148
Couldn't classify 4320, 4451
Sorry, prediction GeneMark_model.108378_t fails validation.
(CCT)	 AG	23-148	GT	ATG
(AGA)	 AG	812-898	GC	GGG
(GGA)	 AG	924-1107	GT	ACG
(GAA)	 AG	1480-1622	GT	CTG
(GCT)	 AG	1653-1673	GT	GGG
(GAC)	 AG	1700-1747	GT	GTG
(GGA)	 AG	1770-1799	GT	GGG
(AGT)	 AG	1863-1868	GT	CGG
(CAT)	 AG	2188-2310	GT	CTG
(AAG)	 AG	2372-2437	GT	GAG
(GGA)	 AG	2475-2502	GT	GGG
(GGC)	 AG	2581-2729	GT	CGG
(GGA)	 AG	4320-4451	GC	CTG
-recovered GeneMark_model.108378_t, internal, 23, 148
-recovered GeneMark_model.108378_t, internal, 812, 898
-recovered GeneMark_model.108378_t, internal, 924, 1107
-recovered GeneMark_model.108378_t, internal, 1480, 1622
-recovered GeneMark_model.108378_t, internal, 1653, 1673
-recovered GeneMark_model.108378_t, internal, 1700, 1747
-recovered GeneMark_model.108378_t, internal, 1770, 1799
-recovered GeneMark_model.108378_t, internal, 1863, 1868
-recovered GeneMark_model.108378_t, internal, 2188, 2310
-recovered GeneMark_model.108378_t, internal, 2372, 2437
-recovered GeneMark_model.108378_t, internal, 2475, 2502
-recovered GeneMark_model.108378_t, internal, 2581, 2729
-recovered GeneMark_model.108378_t, internal, 4320, 4451

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41372.t1
Valid prediction for snap_scaffold_787-snap.1-T1
Valid prediction for snap_scaffold_787-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4464
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support