-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_786

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2667, 2769
Sorry, prediction GlimmerHMM_glimmerT_62235-T1 fails validation.
(ATG)	 CC	764-801	GT	AAG
(AGG)	 AG	2667-2769	GT	CTG
-recovered GlimmerHMM_glimmerT_62235-T1, initial, 764, 801
-recovered GlimmerHMM_glimmerT_62235-T1, internal, 2667, 2769
Couldn't classify 685, 801
Sorry, prediction snap_scaffold_786-snap.2-T1 fails validation.
(GCA)	 AG	685-801	GT	AAG
(AGG)	 AG	2667-2769	GT	CTG
(TTG)	 AG	3416-3457	GT	ATG
(GTG)	 AG	4055-4468	GG	GAG
-recovered snap_scaffold_786-snap.2-T1, terminal, 4055, 4468
-recovered snap_scaffold_786-snap.2-T1, internal, 685, 801
-recovered snap_scaffold_786-snap.2-T1, internal, 2667, 2769
-recovered snap_scaffold_786-snap.2-T1, internal, 3416, 3457

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_786-snap.1-T1
Couldn't classify 43, 424
Couldn't classify 4101, 4452
Sorry, prediction GeneMark_model.108377_t fails validation.
(GCA)	 AG	43-424	GT	CAG
(AGA)	 AG	518-556	GT	AGG
(AGG)	 AG	1579-1593	GT	GGG
(AAA)	 AG	1618-1626	GT	GAG
(GGG)	 AG	1650-1733	GT	GTG
(AGA)	 AG	3070-3087	GT	AAG
(GGT)	 AG	3658-3805	GT	AAG
(GCC)	 AG	4101-4452	GC	TGG
-recovered GeneMark_model.108377_t, internal, 43, 424
-recovered GeneMark_model.108377_t, internal, 518, 556
-recovered GeneMark_model.108377_t, internal, 1579, 1593
-recovered GeneMark_model.108377_t, internal, 1618, 1626
-recovered GeneMark_model.108377_t, internal, 1650, 1733
-recovered GeneMark_model.108377_t, internal, 3070, 3087
-recovered GeneMark_model.108377_t, internal, 3658, 3805
-recovered GeneMark_model.108377_t, internal, 4101, 4452

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4473
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support