-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_785

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3665, 3673
Sorry, prediction GeneMark_model.108375_t fails validation.
(ATG)	 AA	1525-1722	GT	CAG
(TCC)	 AG	2530-2580	GT	TAG
(TGC)	 AG	2638-2706	GT	TAG
(TCC)	 AG	2729-2755	GT	CAG
(CCT)	 AG	2889-2953	GT	AGG
(TGT)	 AG	3372-3398	GT	AGG
(AGG)	 AG	3665-3673	GT	GGG
-recovered GeneMark_model.108375_t, initial, 1525, 1722
-recovered GeneMark_model.108375_t, internal, 2530, 2580
-recovered GeneMark_model.108375_t, internal, 2638, 2706
-recovered GeneMark_model.108375_t, internal, 2729, 2755
-recovered GeneMark_model.108375_t, internal, 2889, 2953
-recovered GeneMark_model.108375_t, internal, 3372, 3398
-recovered GeneMark_model.108375_t, internal, 3665, 3673
Valid prediction for GlimmerHMM_glimmerT_62234-T1
Valid prediction for Augustus_model.g41371.t1
Valid prediction for snap_scaffold_785-snap.2-T1
Couldn't classify 620, 652
Sorry, prediction GeneMark_model.108376_t fails validation.
(GGA)	 AG	620-652	GT	AAG
(TGT)	 AG	826-885	GT	GGG
(GGC)	 AG	996-1083	CG	AGC
-recovered GeneMark_model.108376_t, terminal, 996, 1083
-recovered GeneMark_model.108376_t, internal, 620, 652
-recovered GeneMark_model.108376_t, internal, 826, 885
Valid prediction for snap_scaffold_785-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4476
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support