-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_781

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 121, 223
Sorry, prediction Augustus_model.g41368.t1 fails validation.
(ACG)	 AG	121-223	GT	GGG
(GGT)	 AG	1048-1234	GT	AGG
(CAA)	 AG	2920-2946	AT	AAA
-recovered Augustus_model.g41368.t1, terminal, 2920, 2946
-recovered Augustus_model.g41368.t1, internal, 121, 223
-recovered Augustus_model.g41368.t1, internal, 1048, 1234
Couldn't classify 121, 223
Couldn't classify 4029, 4118
Sorry, prediction snap_scaffold_781-snap.1-T1 fails validation.
(ACG)	 AG	121-223	GT	GGG
(GGT)	 AG	1048-1234	GT	AGG
(GCT)	 AG	4029-4118	GT	CTG
-recovered snap_scaffold_781-snap.1-T1, internal, 121, 223
-recovered snap_scaffold_781-snap.1-T1, internal, 1048, 1234
-recovered snap_scaffold_781-snap.1-T1, internal, 4029, 4118
Couldn't classify 4423, 4437
Sorry, prediction GeneMark_model.108371_t fails validation.
(ATG)	 CG	499-618	GC	AGG
(TTC)	 AG	1055-1269	GT	GGG
(GGA)	 AG	2782-2823	GT	GAG
(GGG)	 AG	2846-2870	GT	CCG
(CCA)	 AG	3820-3834	GT	AGG
(GAG)	 AG	4182-4217	GT	GGG
(GGA)	 AG	4313-4341	GT	GCG
(AGA)	 AG	4375-4389	GT	GCG
(AGA)	 AG	4423-4437	GT	GTG
-recovered GeneMark_model.108371_t, initial, 499, 618
-recovered GeneMark_model.108371_t, internal, 1055, 1269
-recovered GeneMark_model.108371_t, internal, 2782, 2823
-recovered GeneMark_model.108371_t, internal, 2846, 2870
-recovered GeneMark_model.108371_t, internal, 3820, 3834
-recovered GeneMark_model.108371_t, internal, 4182, 4217
-recovered GeneMark_model.108371_t, internal, 4313, 4341
-recovered GeneMark_model.108371_t, internal, 4375, 4389
-recovered GeneMark_model.108371_t, internal, 4423, 4437
Couldn't classify 121, 223
Sorry, prediction GlimmerHMM_glimmerT_62230-T1 fails validation.
(ACG)	 AG	121-223	GT	GGG
(GGT)	 AG	1048-1234	GT	AGG
(GCT)	 AG	4029-4262	AG	AGA
-recovered GlimmerHMM_glimmerT_62230-T1, terminal, 4029, 4262
-recovered GlimmerHMM_glimmerT_62230-T1, internal, 121, 223
-recovered GlimmerHMM_glimmerT_62230-T1, internal, 1048, 1234

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4488
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support