-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_779

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2174, 2240
Sorry, prediction pasa_asmbl_51612.p1 fails validation.
(CCC)	 GC	2174-2240	GT	ACG
(GAT)	 AG	4077-4444	CA	GAC
-recovered pasa_asmbl_51612.p1, terminal, 4077, 4444
Couldn't classify 33, 242
Couldn't classify 4077, 4438
Sorry, prediction snap_scaffold_779-snap.1-T1 fails validation.
(ATC)	 AG	33-242	GT	GAG
(GTG)	 AG	477-565	GT	AGG
(TGG)	 AG	2032-2240	GT	ACG
(GAT)	 AG	4077-4438	GT	TGG
-recovered snap_scaffold_779-snap.1-T1, internal, 33, 242
-recovered snap_scaffold_779-snap.1-T1, internal, 477, 565
-recovered snap_scaffold_779-snap.1-T1, internal, 2032, 2240
-recovered snap_scaffold_779-snap.1-T1, internal, 4077, 4438
Couldn't classify 40, 227
Sorry, prediction Augustus_model.g41364.t1 fails validation.
(GTA)	 AG	40-227	GT	CCG
(GTG)	 AG	477-565	GT	AGG
(TGG)	 AG	2032-2240	GT	ACG
(GAT)	 AG	4077-4444	CA	GAC
-recovered Augustus_model.g41364.t1, terminal, 4077, 4444
-recovered Augustus_model.g41364.t1, internal, 40, 227
-recovered Augustus_model.g41364.t1, internal, 477, 565
-recovered Augustus_model.g41364.t1, internal, 2032, 2240
Valid prediction for GlimmerHMM_glimmerT_62225-T1
Couldn't classify 33, 227
Sorry, prediction GeneMark_model.108366_t fails validation.
(ATC)	 AG	33-227	GT	CCG
(GTG)	 AG	477-565	GT	AGG
(ACT)	 AG	1600-1612	AG	AAA
-recovered GeneMark_model.108366_t, terminal, 1600, 1612
-recovered GeneMark_model.108366_t, internal, 33, 227
-recovered GeneMark_model.108366_t, internal, 477, 565
Couldn't classify 4077, 4438
Sorry, prediction GeneMark_model.108368_t fails validation.
(ATG)	 GA	3773-3785	GT	AGG
(GAT)	 AG	4077-4438	GT	TGG
-recovered GeneMark_model.108368_t, initial, 3773, 3785
-recovered GeneMark_model.108368_t, internal, 4077, 4438

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 75, 369
Couldn't classify 4356, 4439
Sorry, prediction snap_scaffold_779-snap.2-T1 fails validation.
(ATC)	 AG	75-369	GT	TGG
(CAT)	 AG	2287-2455	GT	TAG
(GGG)	 AG	4356-4439	GT	AGG
-recovered snap_scaffold_779-snap.2-T1, internal, 75, 369
-recovered snap_scaffold_779-snap.2-T1, internal, 2287, 2455
-recovered snap_scaffold_779-snap.2-T1, internal, 4356, 4439
Valid prediction for GeneMark_model.108367_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4438, rend_intergenic: 63  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4501
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4438, rend_intergenic: 63  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support