-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_777

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62223-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108361_t
Valid prediction for snap_scaffold_777-snap.1-T1
Couldn't classify 638, 712
Sorry, prediction GeneMark_model.108362_t fails validation.
(AAG)	 AG	638-712	GT	GAG
(GAG)	 AG	1142-1252	GT	GTG
(TGA)	 AG	1756-1764	GT	GAG
(AGA)	 AG	2882-2890	GT	GGG
(ACA)	 AG	2934-3066	AG	GAA
-recovered GeneMark_model.108362_t, terminal, 2934, 3066
-recovered GeneMark_model.108362_t, internal, 638, 712
-recovered GeneMark_model.108362_t, internal, 1142, 1252
-recovered GeneMark_model.108362_t, internal, 1756, 1764
-recovered GeneMark_model.108362_t, internal, 2882, 2890
Couldn't classify 4409, 4432
Sorry, prediction GeneMark_model.108360_t fails validation.
(ATG)	 AG	3605-3615	GC	GAG
(GGG)	 AG	3638-3873	GT	GGG
(AGG)	 AG	4173-4179	GT	GGG
(CAG)	 AG	4215-4385	GC	GAG
(GGA)	 AG	4409-4432	GT	CAG
-recovered GeneMark_model.108360_t, initial, 3605, 3615
-recovered GeneMark_model.108360_t, internal, 3605, 3615
-recovered GeneMark_model.108360_t, internal, 3638, 3873
-recovered GeneMark_model.108360_t, internal, 4173, 4179
-recovered GeneMark_model.108360_t, internal, 4215, 4385
-recovered GeneMark_model.108360_t, internal, 4409, 4432

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4517
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support